PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 427aa MW: 47596.6 Da PI: 8.9609

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010932506.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	4.9e-06	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_010932506.1 67 YVCEICNQGFQRDQNLQMHRRRH 89 9*********************9 PP
2	zf-C2H2	16.3	2.7e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_010932506.1 144 WVCAKCSKAYAVQSDYKAHLKTC 166 58*******************98 PP
3	zf-C2H2	11	0.0013	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_010932506.1 174 DCGRVFSRVESFIEHQDTC 192 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.71E-5	64	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	67	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	108	138	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.2E-4	135	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	93	144	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009630	Biological Process	gravitropism
GO:0009965	Biological Process	leaf morphogenesis
GO:0010601	Biological Process	positive regulation of auxin biosynthetic process
GO:0048444	Biological Process	floral organ morphogenesis
GO:2000012	Biological Process	regulation of auxin polar transport
GO:2000904	Biological Process	regulation of starch metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043621	Molecular Function	protein self-association
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MIGSPPPAPP QPLGINTSSN SSIPPQPFPS LHSVNTTKKK RRPAGTPDPD AEVISLSPRT 60 LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKREA AEVRKRVFVC PEPSCLHHDP 120 CHALGDLVGI KKHFRRKHSN HRQWVCAKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS 180 RVESFIEHQD TCNGGRARTE LGTLQPASLS SDTNFSKPGW PGLQMPNSAA FFLHSDQIPS 240 PSADHRRTNN IELQLLPPSN TKSTSLPSST LSPTSQEAQA TKLQLSIGLG SDRAPPEEPG 300 LATMRLKEEA REQLRLAMAE KALADEARQQ AKRQIELAEQ EFTNAKRIRH QAQAELNRAH 360 ALRDHAVKQI NSTLLQITCY ACKQQFQAKP MMASDENSLV ASYMSSVVTE GEEENDDQNQ 420 QQKNSST

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MIGSPPPAPP QPLGINTSSN SSIPPQPFPS LHSVNTTKKK RRPAGTPDPD AEVISLSPRT  60
LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKREA AEVRKRVFVC PEPSCLHHDP  120
CHALGDLVGI KKHFRRKHSN HRQWVCAKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD TCNGGRARTE LGTLQPASLS SDTNFSKPGW PGLQMPNSAA FFLHSDQIPS  240
PSADHRRTNN IELQLLPPSN TKSTSLPSST LSPTSQEAQA TKLQLSIGLG SDRAPPEEPG  300
LATMRLKEEA REQLRLAMAE KALADEARQQ AKRQIELAEQ EFTNAKRIRH QAQAELNRAH  360
ALRDHAVKQI NSTLLQITCY ACKQQFQAKP MMASDENSLV ASYMSSVVTE GEEENDDQNQ  420
QQKNSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-17	142	214	5	70	Zinc finger protein JACKDAW
5b3h_F	7e-17	142	214	5	70	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	41	KKKRR
2	37	42	KKKRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010932506.1	0.0	protein indeterminate-domain 16
Swissprot	Q9C9X7	1e-139	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A2H3XV52	0.0	A0A2H3XV52_PHODC; protein indeterminate-domain 16
STRING	XP_008789229.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-133	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]