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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HB-other | ||||||||
Protein Properties | Length: 1212aa MW: 136980 Da PI: 8.5146 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.7 | 1.9e-13 | 17 | 67 | 7 | 57 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql+ Le+l+ ++yp++++ ee A +l+Lt +q+++WF rR kekk XP_010932083.1 17 KTQAQLQSLEKLYSDEKYPKQKAVEEYAVSLNLTYNQIRTWFVERRRKEKK 67 599***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-13 | 6 | 70 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.7E-11 | 9 | 72 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-12 | 14 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.22E-10 | 16 | 69 | No hit | No description |
Pfam | PF00046 | 9.4E-11 | 17 | 67 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.928 | 18 | 68 | IPR001356 | Homeobox domain |
SMART | SM00571 | 3.2E-5 | 414 | 473 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 10.447 | 414 | 473 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.0E-8 | 416 | 468 | IPR018501 | DDT domain |
Pfam | PF15612 | 4.8E-8 | 697 | 738 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 5.0E-10 | 840 | 912 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1212 aa Download sequence Send to blast |
MANDDSNVKK DNGTKKKTQA QLQSLEKLYS DEKYPKQKAV EEYAVSLNLT YNQIRTWFVE 60 RRRKEKKENE ALSKLKSSEV VELESDQSND IAFFADGRHV RQKDKHSAPI MHRTNISGHS 120 SNQLVRRKDS WKILGQHMNN SVAGRMQCAE KKHLICLQVL FSKDYILKKV FRKDGPPLGA 180 EFDPPGNVLS CHTGSRKGQN LQSCRDSERS LKKRKVLESP MLDPITSRER NVLERKFGIG 240 KGLMTVWHAT NSGSGKFPTG IDFVNGSAAW MPFKSNASFR KVMCQFSKGM QQRGQRQNTS 300 RKKIQEKRKL PIRKRKVPCG KDVDQKKPHP TECKLSLDEL KSLEQSNALT VLVDDEELEL 360 RELQAGPNPL RCSAHLASSG RHGCPLCKDL LARFPPQSVK MKPPLCIRPW DSSPELVKKL 420 FKVLRFLYTH CATINVCPFT LDELAQAFHD KDSFLLGKIH VALLKLLLLA VEREIAAGFI 480 CRAFKDCRFL GFLNFVREQE LDVNFWSRSL SPLTWTEILR QVLVAAGYGS KQNTMKRQIF 540 SKDRNRMAKY GLHPRTLKGA LFTLLYKQGT GGLKVSELAR TSEIVDLDLP HTKEELEQLI 600 RSTLSSDITL FEKIGPSAFR LRVDPHVKGK EDLLSDTEDS GSVDDDSVDA SSSNDDSDDS 660 KEINSAVRER QIIKYKAWQK KTGQEVAKCT EIDESYSGEA WVLGLMEGEY SDLSIEEKLN 720 ALAALVDLVG AGSILRTEEP VRAISVIPST RSHGSGAKIK KSSTNNHLLS QASWEGLAHN 780 VEETHSLPVS CPTDFSATFL KTTKKGQSSV NANEHHPGVS RRKNAEPMGE PGQVMHPLQS 840 IYLGSDRRYN SYWLFLGPCT VDDPGHRRVY FESSEDGHWG VIDTSQVLHT LCSVLDGRGT 900 REARLLASLE KRESFLCQAM DGYITDEIRI RQTRRSDPSD LDTNGGDGSS PISDIDNVMI 960 PTESTENLLA ASGAIILEVG KGAEDRKQKW ERLQAFDKWI WSSFYSNLNS VKYSKRSYME 1020 SLARCESCHD LYWRDEKHCK ICHATFEIDF DLEERYAIHV ATCREMEDTS DSEYPNHKVL 1080 PSQLQALKAA IHAIEMNMPV AALANTWTSS AHKLWVKRLR RTSSMPELLQ VLVDFVGAIN 1140 EEWLYECASA WGSNMALDDI IVYFQTMPQT TSAVALWMVK LDSLIAPYLE RVQSERRLSN 1200 MLQLQRSGAC TR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 65 | RRRKEK |
2 | 60 | 67 | RRRKEKKE |
3 | 300 | 315 | RKKIQEKRKLPIRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932083.1 | 0.0 | homeobox-DDT domain protein RLT3 | ||||
TrEMBL | A0A2H3ZH97 | 0.0 | A0A2H3ZH97_PHODC; homeobox-DDT domain protein RLT3 | ||||
STRING | XP_008813491.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4556 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |