PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932049.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 384aa    MW: 41514 Da    PI: 5.5379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932049.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.2e-16132178455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_010932049.1 132 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 178
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.81E-18122182No hitNo description
SuperFamilySSF474593.4E-20125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13132178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGDHNSSGVH LNRDVGSSWS FSAPSPFSTS SPSSSSSYSG QHQQGQGFSS LLVHIPPPAC  60
SYSSIARTTA VQMPFPPAGS GCSLLQGAGK PLEQDHEARD CESEEGVEVA EEPAKPVPPR  120
GSGSKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ  180
VQMLSMRNGL NLDPVYLSGA LQPLQTSQMC MGFGADNGTA MNIGAGMLPL NQDSAAQNSF  240
DISNRSASAH QSIVIPSVTN ITNPENSFGM EPSQSHQGSF QLPVSAEEIF TEDMVARQQL  300
AADQTTRNLP GNEMKCMAMA SSRHFSEQSS SLVHDLEECV IGRERPENMP SKDPDNPLLV  360
QHFHGLQTGS SFSSADAKEE QQHF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932049.10.0transcription factor SPATULA isoform X1
TrEMBLA0A2H3Y6F91e-152A0A2H3Y6F9_PHODC; transcription factor SPATULA-like isoform X5
STRINGXP_008793886.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-41bHLH family protein