PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932041.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 194aa    MW: 21705.4 Da    PI: 10.3937
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932041.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1661110255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +k +g+WvAe+r+p++   r r++lg++ t+  Aa+a++ a  +l+g
  XP_010932041.1  61 PYRGVRMRK-WGKWVAEVREPRK---RSRIWLGSYSTPVAAARAYDTAVFYLRG 110
                     59*****99.*******999854...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.64261118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2961119IPR001471AP2/ERF domain
SMARTSM003801.2E-3661124IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2162119IPR016177DNA-binding domain
PfamPF008471.6E-1062110IPR001471AP2/ERF domain
CDDcd000181.63E-2562119No hitNo description
PRINTSPR003674.5E-126273IPR001471AP2/ERF domain
PRINTSPR003674.5E-12100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRLNRDISTS FPPNMSVRER NRETRGQKRE RGRVGIEMEG GCCSTSEETR KPAAGAVKER  60
PYRGVRMRKW GKWVAEVREP RKRSRIWLGS YSTPVAAARA YDTAVFYLRG RSARLNFPEE  120
LAAEEDCEAA TAAAGGMSAA SIRKKATEVG ARVDALQTSL LSQPQQQQQQ SRSPRAPKYP  180
DLNQEPSPES SDMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16621211575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932041.11e-140ethylene-responsive transcription factor ERF011 isoform X1
RefseqXP_019708843.11e-140ethylene-responsive transcription factor ERF011 isoform X1
SwissprotQ9SNE13e-46ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A3Q0HQQ53e-80A0A3Q0HQQ5_PHODC; ethylene-responsive transcription factor ERF011-like
STRINGXP_008776525.15e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-40DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]