PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932038.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 526aa    MW: 57260.1 Da    PI: 5.9711
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932038.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17162211155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010932038.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-16162220IPR016177DNA-binding domain
PfamPF008476.2E-9162211IPR001471AP2/ERF domain
SMARTSM003801.4E-32163225IPR001471AP2/ERF domain
CDDcd000185.79E-11163218No hitNo description
Gene3DG3DSA:3.30.730.102.5E-17163219IPR001471AP2/ERF domain
PROSITE profilePS5103217.767163219IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-6254299IPR016177DNA-binding domain
CDDcd000181.24E-11254299No hitNo description
SMARTSM003802.0E-11255303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MWDLNNSPDP IRDAASPSDE EEWEVEEEPA ESSSPKNAVT DDKGKGPESA STADNDDSSS  60
SALLVEASNE ADGDGCRRVF GFSVGGDGRC SGESELAIVT HQFFPVEEVG GRESDGAEGP  120
LPRAHWVGVK FCPSSKTAAA GKAMDASRPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADTNFNL EDYEEDMKQM NSLTKEEFVH  240
VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIRCNGK DAVTNFDPSI  300
YAGELSAASG HSDHDLDLSL GNSSSKRSSL EPMADDSPGG VDQCVPVAFE QNWRVSIPST  360
RPKFKQPEEA AGINFRLDNA YMQSPGPPSE MYKYPAAFQI IPDPAGFPDS NSVGGGLYLA  420
MRGEEQQLQQ QHRQSNWGNR SSIWPSSHAV ASPHLFATTA AASSGFSPQT AKSPPAWQAG  480
ERVPLPDKTQ LRDNILSPPG DPFESPFSAA KMADSVVCAF SHRLPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932034.10.0floral homeotic protein APETALA 2 isoform X3
TrEMBLA0A2H3YI760.0A0A2H3YI76_PHODC; floral homeotic protein APETALA 2-like isoform X2
STRINGXP_008799004.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.28e-92AP2 family protein