PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931879.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 442aa MW: 48507.8 Da PI: 5.3886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931879.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.6	3e-05	339	371	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk+L XP_010931879.1 339 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKYL 371 55666677777776.....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.579	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.73E-5	332	375	No hit	No description
SuperFamily	SSF47459	3.01E-11	332	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-8	332	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MAEEFQTGIY NSGRWWSTTR TGVFDGPVMS TSVSCSTEFN WATAADVVEA KSRSSDESLG 60 SVSNSSITFQ DTHRPPASDQ FAADPIVDST LQVSDFGLSS PSVNWNQPFL TTGGRAENNL 120 PAFLQEDMSS GSYLRHEPVI ESNQIHMNVE SSSSLNLLED LKQGLMHDQH HLISSGNSRP 180 LFPAPFGLPP TLLQCLFEPE TKHPESFNNQ RMDSLMRYHG VLNESLQSEA AKLPEFDKAL 240 PVKHQLHFSN NTPFWNPSAI ATTETSLGLY SSTTTDLAPH AFEGKTSCSN VLVQSNSEGA 300 GESRSNATKK SSNEPAFKKP RIETPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV 360 LHEAIEYIKY LHEQVGVLSA PYLKNGHQVQ HLQNSDEING GEGPQLDLRS RGLCLVPISS 420 TFAVVSETPV DFWTPTFGGT YR

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MAEEFQTGIY NSGRWWSTTR TGVFDGPVMS TSVSCSTEFN WATAADVVEA KSRSSDESLG  60
SVSNSSITFQ DTHRPPASDQ FAADPIVDST LQVSDFGLSS PSVNWNQPFL TTGGRAENNL  120
PAFLQEDMSS GSYLRHEPVI ESNQIHMNVE SSSSLNLLED LKQGLMHDQH HLISSGNSRP  180
LFPAPFGLPP TLLQCLFEPE TKHPESFNNQ RMDSLMRYHG VLNESLQSEA AKLPEFDKAL  240
PVKHQLHFSN NTPFWNPSAI ATTETSLGLY SSTTTDLAPH AFEGKTSCSN VLVQSNSEGA  300
GESRSNATKK SSNEPAFKKP RIETPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV  360
LHEAIEYIKY LHEQVGVLSA PYLKNGHQVQ HLQNSDEING GEGPQLDLRS RGLCLVPISS  420
TFAVVSETPV DFWTPTFGGT YR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931879.1	0.0	transcription factor bHLH112
TrEMBL	A0A2H3ZRD5	0.0	A0A2H3ZRD5_PHODC; transcription factor bHLH112
STRING	XP_008810246.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	8e-56	bHLH family protein