PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 48507.8 Da PI: 5.3886 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.6 | 3e-05 | 339 | 371 | 17 | 54 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk+L XP_010931879.1 339 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKYL 371 55666677777776.....8*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.579 | 322 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.73E-5 | 332 | 375 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-11 | 332 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-8 | 332 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MAEEFQTGIY NSGRWWSTTR TGVFDGPVMS TSVSCSTEFN WATAADVVEA KSRSSDESLG 60 SVSNSSITFQ DTHRPPASDQ FAADPIVDST LQVSDFGLSS PSVNWNQPFL TTGGRAENNL 120 PAFLQEDMSS GSYLRHEPVI ESNQIHMNVE SSSSLNLLED LKQGLMHDQH HLISSGNSRP 180 LFPAPFGLPP TLLQCLFEPE TKHPESFNNQ RMDSLMRYHG VLNESLQSEA AKLPEFDKAL 240 PVKHQLHFSN NTPFWNPSAI ATTETSLGLY SSTTTDLAPH AFEGKTSCSN VLVQSNSEGA 300 GESRSNATKK SSNEPAFKKP RIETPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV 360 LHEAIEYIKY LHEQVGVLSA PYLKNGHQVQ HLQNSDEING GEGPQLDLRS RGLCLVPISS 420 TFAVVSETPV DFWTPTFGGT YR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931879.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | A0A2H3ZRD5 | 0.0 | A0A2H3ZRD5_PHODC; transcription factor bHLH112 | ||||
STRING | XP_008810246.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 8e-56 | bHLH family protein |