PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 41108 Da PI: 8.0457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.7e-16 | 99 | 143 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W + Ed +l ++v+++G+++W++Ia+++ gR++k+c++rw++ XP_010931451.1 99 CHWRPSEDARLRELVAEYGPHNWNLIAEKLE-GRSGKSCRLRWFNQ 143 57*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1e-17 | 151 | 194 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eE+e+l+ a+k +G++ W+ Iar ++ gRt++++k++w+ XP_010931451.1 151 TAFSEEEEERLLAAHKFYGNK-WAHIARFFP-GRTDNSVKNHWHVM 194 689******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.948 | 93 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 97 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 98 | 143 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.62E-28 | 98 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-26 | 100 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.22E-14 | 101 | 142 | No hit | No description |
PROSITE profile | PS51294 | 25.568 | 145 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-16 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-15 | 151 | 193 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 152 | 197 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.63E-8 | 161 | 195 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGSLNPKSAA GMGFFPPPPP PSSGPFLGAS NTHSAERECR PGDMGFPSEK KQGEVFQGFK 60 GGQGSPGDEK SDGDEGEEGE NSGGRRCNEG GRTKISVRCH WRPSEDARLR ELVAEYGPHN 120 WNLIAEKLEG RSGKSCRLRW FNQLDPRINK TAFSEEEEER LLAAHKFYGN KWAHIARFFP 180 GRTDNSVKNH WHVMMARRRK EMCLGYRRMK PSATFLNPSV PILPRMVEVG SGNNNAHSGE 240 STITTNRDES ASSAPGLSLT SNNNMVIPGF VDRFGPSELP QHFRFLMGSH EKPVAATNVC 300 REKFGTPASC FYNSAPMLMA MGVHQAGHSE ATCRASTTES EANLRNNAII HAERENDGEK 360 MTLPLIDFLG VGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-32 | 101 | 198 | 7 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-32 | 101 | 198 | 7 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931451.1 | 0.0 | transcription factor CSA | ||||
TrEMBL | A0A2H3XS73 | 0.0 | A0A2H3XS73_PHODC; transcription factor CSA-like | ||||
STRING | XP_008787993.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-61 | myb domain protein 105 |