PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931387.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 279aa    MW: 30978.6 Da    PI: 9.1122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931387.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-20115164255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW+AeIrdp++   rkr++lg+f+taeeAa  ++ a+ +l+g
  XP_010931387.1 115 RFRGVRRRP-WGRWAAEIRDPTQ---RKRVWLGTFDTAEEAATVYDSAAVRLKG 164
                     79*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.9E-5911276IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.53E-29114172No hitNo description
SuperFamilySSF541714.12E-22115173IPR016177DNA-binding domain
PfamPF008471.7E-12115164IPR001471AP2/ERF domain
PROSITE profilePS5103224.434115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-30115173IPR001471AP2/ERF domain
SMARTSM003801.6E-35115178IPR001471AP2/ERF domain
PRINTSPR003672.0E-10116127IPR001471AP2/ERF domain
PRINTSPR003672.0E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNPSEVARRR LQVARAKLSE HVVATRKTVP AAKADGRSTR RRVVRVYFTD ADATDSSSSD  60
EEIDGRIARR RVKRHVHEIG IEVAAAAASS ARRRAVAPPP KLMEKAPERP ECGKRFRGVR  120
RRPWGRWAAE IRDPTQRKRV WLGTFDTAEE AATVYDSAAV RLKGAKAVTN FPTEKTSPTP  180
AASAEAVAVD GEPSKSSRSG GGCSDDPHPS PTSVLRYGGD EMPFDWMVDS GKDIYGFSLE  240
PSLCLTDFYW QRPYFWEADF GELDADVNFF LENGDFNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20113177368ATERF1
3gcc_A1e-20113177368ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931387.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2H3YS481e-112A0A2H3YS48_PHODC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_008802999.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-24cytokinin response factor 4