PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010931095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28721.2 Da PI: 7.687 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 107.9 | 4.7e-34 | 41 | 143 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k ltpsdv+k++rlv+pk++ae+h g + e++ l++edesg+sW+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++ + + + XP_010931095.1 41 FEKPLTPSDVGKLNRLVIPKQHAEKHfpldGDSGEKGLLLSFEDESGKSWRFRYSYWTSSQSYVLTKGWSRFVKEKQLDTGDVVLFERLRAGGDR 135 99***************************9666668889************************************************99888888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++ +r+ XP_010931095.1 136 LYIGCRRR 143 99999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-43 | 31 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-32 | 39 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-30 | 40 | 142 | No hit | No description |
SMART | SM01019 | 6.5E-27 | 41 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-31 | 41 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.242 | 41 | 144 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MPINPVRYHP PRAWSWEPPM NPHHHYQVEQ EEAQYERELM FEKPLTPSDV GKLNRLVIPK 60 QHAEKHFPLD GDSGEKGLLL SFEDESGKSW RFRYSYWTSS QSYVLTKGWS RFVKEKQLDT 120 GDVVLFERLR AGGDRLYIGC RRRGAPQATP ARTVARPNSA LPWTMYHTPV ASPYLYVSST 180 QQDCVLHAGS FGDQEEEAVE KAHAPSPAPA NSKRLRLFGV NLDCGPERPE PQPVQPTSWF 240 MGRGSSDASS SQL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-49 | 36 | 143 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-49 | 36 | 143 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931095.1 | 0.0 | B3 domain-containing protein Os11g0156000 isoform X1 | ||||
Swissprot | Q53QI0 | 4e-63 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A2H3YJI6 | 1e-153 | A0A2H3YJI6_PHODC; B3 domain-containing protein Os11g0156000-like | ||||
STRING | XP_008799673.1 | 1e-153 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11580.1 | 5e-64 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|