PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931084.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

E2F/DP

Protein Properties

Length: 469aa MW: 51989.9 Da PI: 4.7055

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931084.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.3	2.3e-27	144	209	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++++gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg XP_010931084.1 144 RYDSSLGLLTKKFINLLKHAQDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 209 6899****************************...99..**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.3E-29	142	211	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	1.4E-34	144	209	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	5.26E-17	144	207	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	1.8E-24	146	209	IPR003316	E2F/DP family, winged-helix DNA-binding domain
CDD	cd14660	1.82E-49	220	326	No hit	No description
SuperFamily	SSF144074	8.89E-35	221	326	No hit	No description
Pfam	PF16421	3.2E-33	225	324	IPR032198	E2F transcription factor, CC-MB domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MTGGRAAGNR SAQQQAGQIF QPLKRHLPFS SVRPRFVAPD EYHRFSAADC RRIADDVADA 60 LVVKTPLKRK PDQEDNEAAE SSEWTTSPGY AEAVTSPLLT PVSGKGGRTY GRSKGKNSKS 120 GPQTPMSNAC SPSSNSLTPV GTCRYDSSLG LLTKKFINLL KHAQDGILDL NKAAETLEVQ 180 KRRIYDITNV LEGIGLIEKK LKNRIRWKGV DDLRPGELDD DVSNLQAEVE NLSLQERSLD 240 ERISEMRDRL RELTEDENNQ KWLYVTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA 300 GEYPHRRYRI VLRSTMGPID VYLVSQFEER FEEMSGVETP PRILPTTNSA FVENSTVGVV 360 TEESRGKEMT PNVQDSQRMS SDPNASQDFV GGMMKIVPSD VDTDADYWLL SDAGVSITDM 420 WKTAPEVQWD AMGRFNPEDF ISSNVSTPQP ETPPSGVINV PSDTNSTHG

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MTGGRAAGNR SAQQQAGQIF QPLKRHLPFS SVRPRFVAPD EYHRFSAADC RRIADDVADA  60
LVVKTPLKRK PDQEDNEAAE SSEWTTSPGY AEAVTSPLLT PVSGKGGRTY GRSKGKNSKS  120
GPQTPMSNAC SPSSNSLTPV GTCRYDSSLG LLTKKFINLL KHAQDGILDL NKAAETLEVQ  180
KRRIYDITNV LEGIGLIEKK LKNRIRWKGV DDLRPGELDD DVSNLQAEVE NLSLQERSLD  240
ERISEMRDRL RELTEDENNQ KWLYVTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA  300
GEYPHRRYRI VLRSTMGPID VYLVSQFEER FEEMSGVETP PRILPTTNSA FVENSTVGVV  360
TEESRGKEMT PNVQDSQRMS SDPNASQDFV GGMMKIVPSD VDTDADYWLL SDAGVSITDM  420
WKTAPEVQWD AMGRFNPEDF ISSNVSTPQP ETPPSGVINV PSDTNSTHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_A	6e-25	139	210	1	74	PROTEIN (TRANSCRIPTION FACTOR E2F-4)
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269\|PubMed:11669580, ECO:0000269\|PubMed:11786543, ECO:0000269\|PubMed:11862494, ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:12913157, ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00661	PBM	Transfer from Pp3c1_6880	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015, ECO:0000269\|PubMed:18424613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931084.1	0.0	transcription factor E2FB isoform X2
Swissprot	Q9FV71	1e-148	E2FB_ARATH; Transcription factor E2FB
TrEMBL	A0A2H3ZUF9	0.0	A0A2H3ZUF9_PHODC; transcription factor E2FB-like
STRING	XP_008799682.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP625	37	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-152	E2F transcription factor 3

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wu M,Liu L,Hijazi H,Chan C A multi-layer inference approach to reconstruct condition-specific genes and their regulation. Bioinformatics, 2013. 29(12): p. 1541-52 [PMID:23610368] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325]