PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 947aa MW: 102904 Da PI: 6.9095 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00073 | 750 | 787 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+++++ Lq XP_010931062.1 750 RQMIQDRIKELREIVPNgA------KCSIDALLEKTIKHMLFLQ 787 77899************66......999999********99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.6E-33 | 5 | 177 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 10.588 | 737 | 786 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-4 | 750 | 795 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010479 | Biological Process | stele development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 947 aa Download sequence Send to blast |
MGLMLREALK RLCIEIGWSY AVFWRAIGAR NPTHLVWGDG YCEQTLGVAG FEATYLLRME 60 QGMISNSSND RTAEMRGLAD YRVGVLVNKI MASQVHVVGD GIIGQAALTG NHQWIVRDNL 120 KDSGSITEGL AEIKCQFLAD IQTIAIIPVF PLGVVQLGST QMVIENVGFI NHVKSLFAQL 180 NHVPRALFSD ITQKTSSLGS QVRSSLGMKI SDSQSTDVCT KPSKNLPPMA SKVTSTKQTI 240 TNKTMLLTGQ FQPNIYPGVK SVLHPNSQLE GIATGAQIIF SKPDGSFVGQ LPSVSAVEGH 300 NHPLGMAPGA SCSGLTFLEE QLLLTSTMQS ANNTESALES NKINQLKSHK CNLPNSLEDP 360 DIAYFFGTNG SLKNANDLGN FGSLPDSTNK SIRVSHANSS VSGVAQVLNQ RNQSNNSLGI 420 SGNSQQNQLS AIKDSQTVST MEKQEVENNL FQASHVPPSA SDAHGLCHNL LVGSLPAHRL 480 SNSNHQQEDQ KSCNIACEAN VTCAVHGQNL KKFEASELLH ASNEKTSCLP MEPTLGSDLF 540 DMLGLDHKTD YACGSFDDVL LQRDNLDACT LGAGISSLST RLDVCPTFDS LNDEISCSGF 600 FSVADSDQLL DAVVSKINSG AKQRSDDSMS CKTSITNIHS SHHGNSPKHG HVDLPEQAQG 660 EIFGLSPMLV KPERAGSSYM KPSCNIGKSE ELSQRVGFHK SQIHLWVESG QNMKSESMSA 720 SNGKRVDEIG KLNRKRPRPG ESPRPRPKDR QMIQDRIKEL REIVPNGAKC SIDALLEKTI 780 KHMLFLQSVT KHVDKLKETG EPKIISKEGG LLLKDNFDGG ATWAFEVGTQ SMICPIVVED 840 LKPPRQLLVE MLCEEHGFFL EIADFIRGLG LTILKGVMEA RKNKVWARFA VEANRDVTRI 900 EIFLSLVRLL GPTAGSSIAP QNVDNVMQHG MLHQPTIPAS GLSDRLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 734 | 738 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931062.1 | 0.0 | transcription factor LHW | ||||
TrEMBL | A0A2H3YJE6 | 0.0 | A0A2H3YJE6_PHODC; transcription factor LHW-like isoform X1 | ||||
STRING | XP_008799711.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2654 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 3e-44 | conserved peptide upstream open reading frame 7 |