PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931062.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 947aa    MW: 102904 Da    PI: 6.9095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931062.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000737507871355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLre++P+ a      K s  + Lek+++++  Lq
  XP_010931062.1 750 RQMIQDRIKELREIVPNgA------KCSIDALLEKTIKHMLFLQ 787
                     77899************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-335177IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.588737786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-4750795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MGLMLREALK RLCIEIGWSY AVFWRAIGAR NPTHLVWGDG YCEQTLGVAG FEATYLLRME  60
QGMISNSSND RTAEMRGLAD YRVGVLVNKI MASQVHVVGD GIIGQAALTG NHQWIVRDNL  120
KDSGSITEGL AEIKCQFLAD IQTIAIIPVF PLGVVQLGST QMVIENVGFI NHVKSLFAQL  180
NHVPRALFSD ITQKTSSLGS QVRSSLGMKI SDSQSTDVCT KPSKNLPPMA SKVTSTKQTI  240
TNKTMLLTGQ FQPNIYPGVK SVLHPNSQLE GIATGAQIIF SKPDGSFVGQ LPSVSAVEGH  300
NHPLGMAPGA SCSGLTFLEE QLLLTSTMQS ANNTESALES NKINQLKSHK CNLPNSLEDP  360
DIAYFFGTNG SLKNANDLGN FGSLPDSTNK SIRVSHANSS VSGVAQVLNQ RNQSNNSLGI  420
SGNSQQNQLS AIKDSQTVST MEKQEVENNL FQASHVPPSA SDAHGLCHNL LVGSLPAHRL  480
SNSNHQQEDQ KSCNIACEAN VTCAVHGQNL KKFEASELLH ASNEKTSCLP MEPTLGSDLF  540
DMLGLDHKTD YACGSFDDVL LQRDNLDACT LGAGISSLST RLDVCPTFDS LNDEISCSGF  600
FSVADSDQLL DAVVSKINSG AKQRSDDSMS CKTSITNIHS SHHGNSPKHG HVDLPEQAQG  660
EIFGLSPMLV KPERAGSSYM KPSCNIGKSE ELSQRVGFHK SQIHLWVESG QNMKSESMSA  720
SNGKRVDEIG KLNRKRPRPG ESPRPRPKDR QMIQDRIKEL REIVPNGAKC SIDALLEKTI  780
KHMLFLQSVT KHVDKLKETG EPKIISKEGG LLLKDNFDGG ATWAFEVGTQ SMICPIVVED  840
LKPPRQLLVE MLCEEHGFFL EIADFIRGLG LTILKGVMEA RKNKVWARFA VEANRDVTRI  900
EIFLSLVRLL GPTAGSSIAP QNVDNVMQHG MLHQPTIPAS GLSDRLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1734738KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931062.10.0transcription factor LHW
TrEMBLA0A2H3YJE60.0A0A2H3YJE6_PHODC; transcription factor LHW-like isoform X1
STRINGXP_008799711.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-44conserved peptide upstream open reading frame 7