PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931055.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 285aa MW: 31895.4 Da PI: 5.2952

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931055.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	9.9e-38	29	83	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 cprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG++rnvPvGgg+rkn++ XP_010931055.1 29 VCPRCDSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGTIRNVPVGGGCRKNRRG 83 7***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	13	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	28	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-32	29	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MLSRVLPYPP QRSLMAYHSW KPNMELAPVC PRCDSSNTKF CYYNNYSLTQ PRYFCKGCRR 60 YWTKGGTIRN VPVGGGCRKN RRGKSARSQA NHPTSLSNLI YDSHGLLDSD RSGHAQHDGM 120 RGSSHHSNKS ELPPSEGSAI DLALLYTKFV NQCPVLNSDP AVPELPGEIM DESFSVMGGA 180 STSVMNQMPD QGLNQLGGWE ITEARFENQM YPEDSNFSLD PGSSESVTFS SEGVVTGNDV 240 TASDCWTPQP MFPGFQPLLE DDMFHHQDLV IGDWYSLDQF YNFDY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029122566.1	0.0	dof zinc finger protein DOF4.1 isoform X2
Swissprot	Q9SVC5	1e-36	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A2H3YJW9	1e-150	A0A2H3YJW9_PHODC; dof zinc finger protein DOF3.5-like
STRING	XP_008799722.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	5e-39	Dof family protein