PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930825.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 480aa    MW: 54268.8 Da    PI: 6.6795
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930825.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.71.1e-93794551373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+ A+av+++++  a ++L +l +++s +gdp+qR+aayf+ +L arl+ ++s  y+++ + +++    +ee+ a++ ++++sP+++f+h
  XP_010930825.1  79 LIHLLLASATAVDANNMISAINALHELYQHVSTNGDPIQRVAAYFADGLTARLLTKSSPFYQTIMAHPAP----EEEFLAFTELYKASPFHQFAH 169
                     689*************************************************************999998....678888899************ PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaI+ea+e+e     + +H+iDfd+s G+QWp+L+q+L++++  ++p slRiTg+g+    s eel+et+ rL +f + + +++++f+ l 
  XP_010930825.1 170 FTANQAIMEAFEEEeehngRGLHVIDFDVSSGFQWPSLIQSLSDKAtrSKPISLRITGIGR----SVEELRETEMRLVNFTKGCdNLQMKFEGL- 259
                     ************9976666668*********************999856666*********....9****************9956*******8. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        l     ++++++++ +l+Vnlv+ l++l  +s +    +++vL  + sl+P +vvvve+e      +Fl rf+e+l+yy+a+fdsl+  lp+
  XP_010930825.1 260 ---LRGSARSDFKIEKNATLVVNLVFYLQNLR-SSSE----ISDVLMGIYSLNPSLVVVVEKEGGQRPRTFLSRFMESLHYYAAMFDSLDDCLPA 346
                     ...66777899*******************97.3333....456*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerh...etlekWrerleeaGFkpvplsekaakqaklllr......kvksdg...yrveee.sgslv 359
                     es er k+E+  lgrei+ + + e++e +e+h   e+l +W+ ++e++GF++++ls++ + qaklll+      ++++dg   +r+ e+ +g ++
  XP_010930825.1 347 ESTERLKIEKNHLGREIKIAMTEEEKE-KEKHlkfERLDTWKGKMESFGFQEIKLSSRSVGQAKLLLKikshlsTIENDGvcgFRILERdEGRAI 440
                     ******************999999998.444423378889**************************97222221222333333666544466666 PP

            GRAS 360 .lgWkdrpLvsvSaW 373
                      lgW+dr L++vSaW
  XP_010930825.1 441 sLGWQDRHLTTVSAW 455
                     7************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.89653425IPR005202Transcription factor GRAS
PfamPF035143.7E-9179455IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MQEDTGEEML SLNLGISSTW CSSTTKKRKR IDESNVISCG ALMRDVLDKK FFGLLQGRER  60
MLRLDPRRNG LEDGGGLQLI HLLLASATAV DANNMISAIN ALHELYQHVS TNGDPIQRVA  120
AYFADGLTAR LLTKSSPFYQ TIMAHPAPEE EFLAFTELYK ASPFHQFAHF TANQAIMEAF  180
EEEEEHNGRG LHVIDFDVSS GFQWPSLIQS LSDKATRSKP ISLRITGIGR SVEELRETEM  240
RLVNFTKGCD NLQMKFEGLL RGSARSDFKI EKNATLVVNL VFYLQNLRSS SEISDVLMGI  300
YSLNPSLVVV VEKEGGQRPR TFLSRFMESL HYYAAMFDSL DDCLPAESTE RLKIEKNHLG  360
REIKIAMTEE EKEKEKHLKF ERLDTWKGKM ESFGFQEIKL SSRSVGQAKL LLKIKSHLST  420
IENDGVCGFR ILERDEGRAI SLGWQDRHLT TVSAWHCVRS PNHSLDAACS WPNVSSLRPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-518745527378Protein SCARECROW
5b3h_A2e-518745526377Protein SCARECROW
5b3h_D2e-518745526377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930825.10.0scarecrow-like protein 3
TrEMBLA0A2H3XCB60.0A0A2H3XCB6_PHODC; DELLA protein RGL2-like
STRINGXP_008781654.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-51RGA-like 2