PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 508aa MW: 56186.4 Da PI: 5.6613

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930823.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.3e-06	261	282	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C k F+r+ nL+ H+r H XP_010930823.1 261 FCSICQKGFKRSANLRMHMRGH 282 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.17E-5	259	284	No hit	No description
SMART	SM00355	0.0037	260	282	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.302	260	287	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.7E-6	262	282	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	262	282	IPR007087	Zinc finger, C2H2
SMART	SM00355	70	309	342	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	20	347	369	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MDRERMPIFE ASSSMSYPSE DTNSNPLFTQ FDPKILSYGA GSEQSVSKFP QNLDSLSIWS 60 SHAEKVDKPP DQVASFSDNQ TNPTVDWDPR SMLSNLIFID QKIHQVQDII RSTIDIEGQS 120 SNQPNEVTMK QQLVTADLAC IISQLISTAG YLLPSVNSTL MSDIPPVGRM GGTIASTSSI 180 ALNDTLQQNK DFASERNKAI QHNDSIKSLT HTGDEGIKPV AMKHHDAKDH KDSENGENLP 240 LGSYEVLEPK KEEILAPHTH FCSICQKGFK RSANLRMHMR GHGDEYKSPA ALAKPSNEAS 300 LESMALKRYS CPFIGCKRNK EHEKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNTKKFSVL 360 ADLKTHEKHC GRDRWLCSCG TTFSRKDKLL GHINLFPGHS PAISVDDVKA SGVTDQGRNS 420 ETMSEIGSLG SNFLGNSMDD VDDLDLEDVD DDPSSFSSGD FGSFSFGNLD DIPQQSFDAS 480 ESLFSYFPSG SCDYVQNNGD NSNLNHLG

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MDRERMPIFE ASSSMSYPSE DTNSNPLFTQ FDPKILSYGA GSEQSVSKFP QNLDSLSIWS  60
SHAEKVDKPP DQVASFSDNQ TNPTVDWDPR SMLSNLIFID QKIHQVQDII RSTIDIEGQS  120
SNQPNEVTMK QQLVTADLAC IISQLISTAG YLLPSVNSTL MSDIPPVGRM GGTIASTSSI  180
ALNDTLQQNK DFASERNKAI QHNDSIKSLT HTGDEGIKPV AMKHHDAKDH KDSENGENLP  240
LGSYEVLEPK KEEILAPHTH FCSICQKGFK RSANLRMHMR GHGDEYKSPA ALAKPSNEAS  300
LESMALKRYS CPFIGCKRNK EHEKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNTKKFSVL  360
ADLKTHEKHC GRDRWLCSCG TTFSRKDKLL GHINLFPGHS PAISVDDVKA SGVTDQGRNS  420
ETMSEIGSLG SNFLGNSMDD VDDLDLEDVD DDPSSFSSGD FGSFSFGNLD DIPQQSFDAS  480
ESLFSYFPSG SCDYVQNNGD NSNLNHLG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930823.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	1e-171	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2H3XBY9	0.0	A0A2H3XBY9_PHODC; zinc finger protein STOP1 homolog
STRING	XP_008781514.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-135	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]