PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010930750.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 839aa MW: 96104.3 Da PI: 7.8279

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930750.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.8e-21	36	120	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ Y+ke+GF vrk+ k+ + +g +++r f C+keg++++ k+ +r r+ r gC+a+++v+ ++dg ++v+++e +HnHela XP_010930750.1 36 QFYCLYGKEMGFGVRKHLVKR-RSSGLVYSRVFSCYKEGFSRTAKQG----KRARPDARSGCQAHMTVRIMNDGGFRVSEFEPKHNHELA 120 6***********9987666.58999**********998766....99*********************************96 PP
2	FAR1	75.4	1.2e-23	222	308	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +GFsvrk+ k+ + +g i++r +vC keg+r++++++ + r +++ +rtgC a++++k +k+g+++vt++e +HnH+l+ XP_010930750.1 222 QFYINYAAGIGFSVRKHLVKR-RASGIIYSRMYVCHKEGFRRKKDEQ--RGRCPKPYERTGCLASMTIKITKNGRYCVTEFEPKHNHALV 308 6***********9987666.59999************9988..9***********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	36	120	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.8E-21	222	308	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-31	433	525	IPR018289	MULE transposase domain
Pfam	PF04434	6.3E-7	700	743	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.905	711	747	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.1E-5	722	749	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MSELVEQPVS FVGNASDESW VPKIDMVFES DEKAYQFYCL YGKEMGFGVR KHLVKRRSSG 60 LVYSRVFSCY KEGFSRTAKQ GKRARPDARS GCQAHMTVRI MNDGGFRVSE FEPKHNHELA 120 ANALTAVPEV ADDSGTMPQA AHKNVGKQAI VRPSLRNYIP SKSFNAMKPG GTGAVMRYVQ 180 RSMQDGRSDS LSLCHPMGDA AVNESWVPKI GLEFEDDEAA YQFYINYAAG IGFSVRKHLV 240 KRRASGIIYS RMYVCHKEGF RRKKDEQRGR CPKPYERTGC LASMTIKITK NGRYCVTEFE 300 PKHNHALVIP SKAHLFRWRW RRGLIATQAD LMDLAEELEA SPKPSKEQMD EQDESCQNPA 360 FLSSDYKNYI PSKRMNAMKL GDAGAVMQYV HEKQVADPSF YYALQLDCDD RVTNIFWADA 420 KSMVDFEYFG DALCLDTTYK TSDYGRPFSH FIGVNHHKQA IIFGAAFLYD ETEESFKWLF 480 DTFKTAMSGK QPRLILTDRS GAMSSAIAAA WPGTTHRLCV WHMYNSATKH LNFVFQGSVT 540 FARDFSKCLY DYEDEDEFLL GWKTMLENYD LHSNEWLAKL YEDREKWALA YGRQIFCADM 600 KTALIKESMN NMLKELLDAE RDLSDFFKHY DEIVFERRQA ELQADIHARQ NIQMTLSSRM 660 LRQAANAYTP EVLKIFQREF ELSMDCLVYA CGQVETTFEF KVTVEDNPKQ YTVRYDSSNG 720 MVTCSCKKFE FVGIQCRHVL KTLDIINIKE LPPGYILKRW TKDAKVANRR ANHEVAIDGG 780 TKSTHANRYS SLCCIFNKIA VRAAETVESY TFIESLSDQL MEQVYKILQT RPPQGLEAG

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MSELVEQPVS FVGNASDESW VPKIDMVFES DEKAYQFYCL YGKEMGFGVR KHLVKRRSSG  60
LVYSRVFSCY KEGFSRTAKQ GKRARPDARS GCQAHMTVRI MNDGGFRVSE FEPKHNHELA  120
ANALTAVPEV ADDSGTMPQA AHKNVGKQAI VRPSLRNYIP SKSFNAMKPG GTGAVMRYVQ  180
RSMQDGRSDS LSLCHPMGDA AVNESWVPKI GLEFEDDEAA YQFYINYAAG IGFSVRKHLV  240
KRRASGIIYS RMYVCHKEGF RRKKDEQRGR CPKPYERTGC LASMTIKITK NGRYCVTEFE  300
PKHNHALVIP SKAHLFRWRW RRGLIATQAD LMDLAEELEA SPKPSKEQMD EQDESCQNPA  360
FLSSDYKNYI PSKRMNAMKL GDAGAVMQYV HEKQVADPSF YYALQLDCDD RVTNIFWADA  420
KSMVDFEYFG DALCLDTTYK TSDYGRPFSH FIGVNHHKQA IIFGAAFLYD ETEESFKWLF  480
DTFKTAMSGK QPRLILTDRS GAMSSAIAAA WPGTTHRLCV WHMYNSATKH LNFVFQGSVT  540
FARDFSKCLY DYEDEDEFLL GWKTMLENYD LHSNEWLAKL YEDREKWALA YGRQIFCADM  600
KTALIKESMN NMLKELLDAE RDLSDFFKHY DEIVFERRQA ELQADIHARQ NIQMTLSSRM  660
LRQAANAYTP EVLKIFQREF ELSMDCLVYA CGQVETTFEF KVTVEDNPKQ YTVRYDSSNG  720
MVTCSCKKFE FVGIQCRHVL KTLDIINIKE LPPGYILKRW TKDAKVANRR ANHEVAIDGG  780
TKSTHANRYS SLCCIFNKIA VRAAETVESY TFIESLSDQL MEQVYKILQT RPPQGLEAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930750.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_029122469.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A2H9ZUK1	0.0	A0A2H9ZUK1_9ASPA; Protein FAR1-like 5
STRING	XP_008781579.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1-related sequence 5