PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929882.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 493aa    MW: 54030.9 Da    PI: 5.7881
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929882.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17172221155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010929882.1 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221
                     78*******************......55************************997 PP
2AP2292.6e-09264314151
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAa....kaaiaark 51 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa    +a+++a+ 
  XP_010929882.1 264 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAAswdiRAYDKAAI 314
                     89********.7******5553..2.26**********99**9444456666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.34E-16172231IPR016177DNA-binding domain
PfamPF008473.3E-9172221IPR001471AP2/ERF domain
CDDcd000182.23E-11172231No hitNo description
SMARTSM003808.5E-31173235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-17173230IPR001471AP2/ERF domain
PROSITE profilePS5103217.754173229IPR001471AP2/ERF domain
PfamPF008474.6E-5264318IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-13264327IPR016177DNA-binding domain
CDDcd000181.05E-21264328No hitNo description
SMARTSM003801.3E-26265332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-12265326IPR001471AP2/ERF domain
PROSITE profilePS5103211.403265326IPR001471AP2/ERF domain
PRINTSPR003678.1E-6266277IPR001471AP2/ERF domain
PRINTSPR003678.1E-6308328IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MVLDLNVASP GESSSSGEEK VLMEEGSGGW PMEESGNSNS SVLNVDACSN ACDDDFCSTP  60
FAAHDVGGGF NFGILKSCLA ADGEEELEED LEEEDGASVE AGFVTRQLFP PVVAVQESVQ  120
PSVMVSSSAP AMPRGMELSF LQCNTAGSTE AKALQQKQQA KKTRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GIDADINFNL SYYEEDLKQM  240
RNLTKEEFVH ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEIE  300
AASWDIRAYD KAAIKCNGME AVTNFEPSTY DGEIRPEPDD EVEAAGNNID LDLRLSQPNV  360
HSHKKNNNSM DIQLSCSSFE ASDARNFRAD NPTSHLAHHH HLPIAPEHPH AWTALCPGFF  420
PHVEERATKG CELGLSAVTN RAWSMHGPTL PLSSAASSGF STTATVAVAH HPSPSAAHRN  480
FPPSAAVDYY CRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929882.10.0APETALA2-like protein 2 isoform X1
RefseqXP_019708184.10.0APETALA2-like protein 2 isoform X1
SwissprotQ8H4431e-123AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2H3YQF30.0A0A2H3YQF3_PHODC; floral homeotic protein APETALA 2-like
STRINGXP_008802331.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-92related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]