PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010929644.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 329aa MW: 36679.3 Da PI: 6.3742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929644.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.3e-08	175	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i+ ++ L+ l+P + +k + Ka +L + ++Y++sLq XP_010929644.1 175 SHSLAERARREKIRGRMKMLQGLVPGC----DKVNGKALMLDEIINYVRSLQ 222 8***********************9....5559**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	169	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.80E-9	169	226	No hit	No description
PROSITE profile	PS50888	14.545	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-15	171	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-6	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-8	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MEAFSYQQNQ AFLVDSAGLT TTPFEMLLPP PQVGEMSNNS FSSFPFYFSP EAILEVSAID 60 ASAYQSSSSL DTSSKAPSSE SKMTLSWVVT EPHDEVVQKQ EVSMEKKRKI GHGTCLSSGQ 120 TKERKSRKQR KPNGDLKGKE DKKSNDEVSK ATKAGEEPPP GFIHVRARRG QATDSHSLAE 180 RARREKIRGR MKMLQGLVPG CDKVNGKALM LDEIINYVRS LQNQVEFLSA KLMLYDFGGD 240 IDDSMNILEK MGIIPQQVPF GNQTTHIQAP SFENATNNYQ IKDPSVPLLL NCQQPTAFSQ 300 DGDSFMVQVG EQRQQFLNQV DFTNMCSFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019708367.1	0.0	transcription factor bHLH137 isoform X1
TrEMBL	A0A2H3XZK9	1e-167	A0A2H3XZK9_PHODC; transcription factor bHLH79-like isoform X1
STRING	XP_008791059.1	1e-168	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-48	bHLH family protein