PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929483.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 232aa    MW: 27209.9 Da    PI: 9.0874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929483.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.8e-191151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+s r  tf kR++g++KK +ELS+LCd+++++i+++++
  XP_010929483.1 11 IVNDSARRATFKKRKKGLMKKVSELSTLCDVKACLIVYGPN 51
                    789************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.138151IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-25160IPR002100Transcription factor, MADS-box
CDDcd002665.37E-19285No hitNo description
SuperFamilySSF554552.49E-25395IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MARKKVKLEW IVNDSARRAT FKKRKKGLMK KVSELSTLCD VKACLIVYGP NEPEAEVWPS  60
VPDAMRVLTK LKKMPEMEQS KKMMNQEGFM RQRIMKLQEQ LRKQDRENRE LETILLMYQG  120
LAGRSLHTVT IEDMTSLAWL IEMKVNKVQE RIEHSKGEIA SKMVEGMKEE KKKVEGPSNI  180
KEKISLEVAM EELQRQEWFT EIMNPHDLMI CGNEVVQPYI DHNNPWLDAY FP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLEWIVNDSARRATFKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929483.11e-171agamous-like MADS-box protein AGL80
TrEMBLA0A2H3YNY21e-151A0A2H3YNY2_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008801454.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-43AGAMOUS-like 80