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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26681.9 Da PI: 5.0663 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.8e-14 | 96 | 141 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er+RR+++N+++ Lr+++P+ +K++Ka+i + A++YI++Lq XP_010929342.1 96 NIVMERNRRRKLNERLYALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 141 5679*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.977 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-19 | 95 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.89E-15 | 95 | 145 | No hit | No description |
Pfam | PF00010 | 2.3E-11 | 96 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-17 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-18 | 97 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDDMEAEYNF YWETKRFFES EELDRFSLSL HSYTIYTILH AFFPRPTPPP FYRSSKQQAI 60 KLSYCFSCGW GLDEALSGYY DSSSPENAAS STAAKNIVME RNRRRKLNER LYALRSVVPN 120 ITKMDKASII KDAIDYIQEL QEQERRMQAE ISELETVKEE QAPIGDTERD DVNFTQRKKK 180 RSSRGSPLAP GSPSSASIEL MDTDEMGSAQ LKMKIQGAIA ELDGSRSPGS SMSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 100 | 162 | 13 | 79 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929342.1 | 1e-174 | transcription factor bHLH35 isoform X5 | ||||
Swissprot | Q2HIV9 | 2e-37 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2H3ZCF0 | 6e-90 | A0A2H3ZCF0_PHODC; transcription factor bHLH35 isoform X1 | ||||
STRING | XP_008811438.1 | 9e-91 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 5e-30 | bHLH family protein |