PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929341.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 248aa    MW: 27924.4 Da    PI: 4.6586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929341.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-145398555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +  +Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++YI++Lq
  XP_010929341.1 53 NIVMERNRRRKLNERLYALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 98
                    5679*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.9774897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.10E-1552102No hitNo description
SuperFamilySSF474596.02E-1952113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-115398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1854113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-1754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDDMEAEYNF YWETKRFFES EELDSGWGLD EALSGYYDSS SPENAASSTA AKNIVMERNR  60
RRKLNERLYA LRSVVPNITK MDKASIIKDA IDYIQELQEQ ERRMQAEISE LETVKEEQAP  120
IGDTERDDVN FTQRKKKRSS RGSPLAPGSP SSASIELMDL KVCEVGDKTL VVSITCNRKR  180
DTMIRMCEVF DSLNLKIITA NITSVSGSLL HTLFVETDEM GSAQLKMKIQ GAIAELDGSR  240
SPGSSMSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13571191379Transcription factor MYC2
5gnj_B3e-13571191379Transcription factor MYC2
5gnj_E3e-13571191379Transcription factor MYC2
5gnj_F3e-13571191379Transcription factor MYC2
5gnj_G3e-13571191379Transcription factor MYC2
5gnj_I3e-13571191379Transcription factor MYC2
5gnj_M3e-13571191379Transcription factor MYC2
5gnj_N3e-13571191379Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929341.10.0transcription factor bHLH35 isoform X4
SwissprotQ2HIV99e-81BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2H3ZCF01e-165A0A2H3ZCF0_PHODC; transcription factor bHLH35 isoform X1
STRINGXP_008811438.11e-165(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-69bHLH family protein