PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929340.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 291aa    MW: 33020.4 Da    PI: 5.5298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929340.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1396141555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  +Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++YI++Lq
  XP_010929340.1  96 NIVMERNRRRKLNERLYALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 141
                     5679*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.97791140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-1495145No hitNo description
SuperFamilySSF474597.98E-1995156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1196141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1897156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-1797146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDDMEAEYNF YWETKRFFES EELDRFSLSL HSYTIYTILH AFFPRPTPPP FYRSSKQQAI  60
KLSYCFSCGW GLDEALSGYY DSSSPENAAS STAAKNIVME RNRRRKLNER LYALRSVVPN  120
ITKMDKASII KDAIDYIQEL QEQERRMQAE ISELETVKEE QAPIGDTERD DVNFTQRKKK  180
RSSRGSPLAP GSPSSASIEL MDLKVCEVGD KTLVVSITCN RKRDTMIRMC EVFDSLNLKI  240
ITANITSVSG SLLHTLFVET DEMGSAQLKM KIQGAIAELD GSRSPGSSMS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-131001621379Transcription factor MYC2
5gnj_B7e-131001621379Transcription factor MYC2
5gnj_E7e-131001621379Transcription factor MYC2
5gnj_F7e-131001621379Transcription factor MYC2
5gnj_G7e-131001621379Transcription factor MYC2
5gnj_I7e-131001621379Transcription factor MYC2
5gnj_M7e-131001621379Transcription factor MYC2
5gnj_N7e-131001621379Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929340.10.0transcription factor bHLH35 isoform X1
SwissprotQ2HIV93e-74BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2H3ZCF01e-154A0A2H3ZCF0_PHODC; transcription factor bHLH35 isoform X1
STRINGXP_008811438.11e-155(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-64bHLH family protein