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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 509aa MW: 52445.4 Da PI: 6.7631 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.4e-12 | 296 | 341 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_010929150.1 296 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 341 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-17 | 289 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.19E-13 | 289 | 345 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-16 | 293 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-9 | 296 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MQQSSREMQG MASSLNGIPS SAGVAAAAAQ IALQELHNGH RQQQIQNPSM QVPAAHFDHS 60 TAGSEAGSHD DFFDQMLSSL PSSWPDLGNP KVPWDLTSSS NPNGLAGKSP EESATAAAEG 120 LQYAPYDESL LLASRLRQHQ ISGGSSPAGK QMLLQLNHPH QQQQQQQMLL QGMGRSPVAT 180 SGGDSGLLPM PLSLGSAGSA DSRLLVDRSR DELDPSFRSN PTGGEGLYNG FGGSLQGGAQ 240 AAPQQHFHHP QGPSMPAQNF GGAPSAGVGQ AGAAGGGTAP PRQRVRARRG QATDPHSIAE 300 RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP 360 VVSDMPSEGQ SGRSGINGAA GNDSLTVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA 420 SAISSATCHP RPVAGNGGGI HHLNPGCLIP APPPSNHNNP AVGSGAGGGG DGPSSPSMSV 480 LTVQSAMANG GDTDVSRTSV KDAASVSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 305 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929150.1 | 0.0 | uncharacterized protein LOC105050721 isoform X2 | ||||
Swissprot | Q9ZUG9 | 2e-80 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A2H3Y6Y9 | 0.0 | A0A2H3Y6Y9_PHODC; uncharacterized protein LOC103710419 | ||||
STRING | XP_008794343.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 9e-65 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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