PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010929149.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 514aa MW: 53013 Da PI: 6.8755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929149.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.5e-12	296	341	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_010929149.1 296 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 341 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-17	289	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.28E-13	289	345	No hit	No description
PROSITE profile	PS50888	17.39	291	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-16	293	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-9	296	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MQQSSREMQG MASSLNGIPS SAGVAAAAAQ IALQELHNGH RQQQIQNPSM QVPAAHFDHS 60 TAGSEAGSHD DFFDQMLSSL PSSWPDLGNP KVPWDLTSSS NPNGLAGKSP EESATAAAEG 120 LQYAPYDESL LLASRLRQHQ ISGGSSPAGK QMLLQLNHPH QQQQQQQMLL QGMGRSPVAT 180 SGGDSGLLPM PLSLGSAGSA DSRLLVDRSR DELDPSFRSN PTGGEGLYNG FGGSLQGGAQ 240 AAPQQHFHHP QGPSMPAQNF GGAPSAGVGQ AGAAGGGTAP PRQRVRARRG QATDPHSIAE 300 RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP 360 VVSDMPSERL AVQGQSGRSG INGAAGNDSL TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM 420 PISLASAISS ATCHPRPVAG NGGGIHHLNP GCLIPAPPPS NHNNPAVGSG AGGGGDGPSS 480 PSMSVLTVQS AMANGGDTDV SRTSVKDAAS VSKP

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MQQSSREMQG MASSLNGIPS SAGVAAAAAQ IALQELHNGH RQQQIQNPSM QVPAAHFDHS  60
TAGSEAGSHD DFFDQMLSSL PSSWPDLGNP KVPWDLTSSS NPNGLAGKSP EESATAAAEG  120
LQYAPYDESL LLASRLRQHQ ISGGSSPAGK QMLLQLNHPH QQQQQQQMLL QGMGRSPVAT  180
SGGDSGLLPM PLSLGSAGSA DSRLLVDRSR DELDPSFRSN PTGGEGLYNG FGGSLQGGAQ  240
AAPQQHFHHP QGPSMPAQNF GGAPSAGVGQ AGAAGGGTAP PRQRVRARRG QATDPHSIAE  300
RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP  360
VVSDMPSERL AVQGQSGRSG INGAAGNDSL TVTEHQVAKL MEEDMGSAMQ YLQGKGLCLM  420
PISLASAISS ATCHPRPVAG NGGGIHHLNP GCLIPAPPPS NHNNPAVGSG AGGGGDGPSS  480
PSMSVLTVQS AMANGGDTDV SRTSVKDAAS VSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	305	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010929149.1	0.0	uncharacterized protein LOC105050721 isoform X1
Swissprot	Q9ZUG9	2e-79	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2H3Y6Y9	0.0	A0A2H3Y6Y9_PHODC; uncharacterized protein LOC103710419
STRING	XP_008794343.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	8e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]