PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929074.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 501aa    MW: 54360.8 Da    PI: 5.7027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929074.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09322370355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  XP_010929074.1 322 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 370
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-10317374No hitNo description
SuperFamilySSF474595.23E-17317387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17320386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6322370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEMDSNDKCG MEKRSGDHLN HQTSGISASW QFGTPSMGAV PANPPIAMCQ GAPITSSSCP  60
SVTVVDSFGP GPWNHPANPQ NSGFSNVQTT MSASTSIPIG KPVSVSSREM FLPPIPGILL  120
PSLSLFPADS AFIERAARFS CFNGGNFSDI TNAFGPSESL TPLSNASRDV TGDQVQKSEL  180
HLNEVPRDIV VPIGCGSIGG SPLNNRRDQG SSLVGGLSNE CWEANFSEDD QEKSPELTNT  240
AGNSSSSDLA AKKRKRTDQD MELDQVQRGP QLSTENTKDT TETKQKVEKN SSKPTGKQVK  300
DSTEGPKEDY IHVRARRGQA TNSHSLAERV RREKISERMK YLQDLVPGCS KVTGKAVMLD  360
EIINYVQSLQ RQVEFLSMKL ATVNPRTDFN MEGTLSKDFS QTCGGSSSMI GFSPDMILPQ  420
LHPSQQGLVQ FGISGMGNPS DAIRRAMNAQ LTAMNGFKEP MPQIPDVWDD ELHNVMQLNY  480
NANPPFNSKE LNSKPRDGFP I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256KKRKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929074.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A2H3XFL40.0A0A2H3XFL4_PHODC; transcription factor bHLH49
STRINGXP_008783047.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-86bHLH family protein