PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929067.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 338aa    MW: 36806.8 Da    PI: 4.7551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929067.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.52.4e-184695255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h++ E+rRR +iN++f+ Lr+l+P++    ++K +Ka+ L +++eYIk Lq
  XP_010929067.1 46 RSKHSATEQRRRYKINDRFQILRDLIPHS----DQKRDKASFLLEVIEYIKFLQ 95
                    889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.0724494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1944113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-2244102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-164695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-174699No hitNo description
SMARTSM003531.3E-1350100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDTASQLSED EDEFGRRQGS SQKVELSVKV DGKGGGQKPG TPTTPRSKHS ATEQRRRYKI  60
NDRFQILRDL IPHSDQKRDK ASFLLEVIEY IKFLQERLQK YEPYQGWCPA NAKLMPWSNS  120
QGPTDGVSDS SHVFKNGPSP PGFMFTEKFV DNTIPIAPTM LSHTQNVEEP DMNPGTGAVL  180
VPLQPNFCAS VGMESGLTEP QEGLISDSDN MASQSQSWQR PSGPADCNIG GDMLSEQEEL  240
AIDEGTISIS SVYTQGILTT LTQALESSGI DLSQASISVQ INLGKRAISR RPTATTTMSG  300
AKDHEDPSAV NQVMGDSRVG SSGEESEQAL KRHKVDSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929067.10.0transcription factor BIM2 isoform X1
TrEMBLA0A2H3XFJ30.0A0A2H3XFJ3_PHODC; transcription factor BIM2-like isoform X1
STRINGXP_008783041.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.16e-58BES1-interacting Myc-like protein 2