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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_010928971.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 291aa MW: 32521 Da PI: 5.4732 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 38.1 | 2.7e-12 | 102 | 145 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
e+Er RRd++++++ Lr+++P+ +Kl+Ka+i + A++YI +Lq
XP_010928971.1 102 EMERIRRDKLKERLYALRRVVPNI-----TKLDKASIIKDAIDYIEELQ 145
89*********************7.....7******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.917 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 6.94E-17 | 97 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.7E-15 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 8.3E-10 | 102 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 8.29E-14 | 102 | 149 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 4.5E-15 | 102 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 291 aa Download sequence Send to blast |
MAMPSEWEIM GPSHYEGGRG VLGAEKHGNR IDNDEVSEVV KLALPIWICL LTPSNILLYA 60 FPSLLFSHGP FNGSSRIIGE ASTEQYNSSS SFPSSTPSKY AEMERIRRDK LKERLYALRR 120 VVPNITKLDK ASIIKDAIDY IEELQEQERR LLSEISDLEL SNAFHKIIND IEQDDVYGTQ 180 RKRKRTSWSP ALSSLGSPFM PSIEVLELRV SAVDNRTLVI NFTCKKTRRD TLTKMCEVFE 240 SLNLNIIAAN ITSNPGSLSH TLFVESDEMD SAGLKGKIEA AIVELGVQAS P |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019707787.2 | 1e-154 | transcription factor bHLH35-like | ||||
| TrEMBL | A0A2H3XWT4 | 3e-88 | A0A2H3XWT4_PHODC; transcription factor bHLH35-like | ||||
| STRING | XP_008789721.1 | 6e-94 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1044 | 38 | 133 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57150.1 | 3e-41 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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