PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928863.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 336aa    MW: 37948.6 Da    PI: 7.2804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928863.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-05256278123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_010928863.1 256 FMCRKCGKAFAVRGDWRTHEKNC 278
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-5168194No hitNo description
Gene3DG3DSA:3.30.160.606.8E-6172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.58172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64172199IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-6237276No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6243276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549256276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808256276IPR007087Zinc finger, C2H2
SMARTSM00355150282305IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADPYTNFFK GCFNYFPFSS SNPSPPLPTH SFYTNYTTPH LQSTPHFPSP STPPLPLREA  60
LPLLSLSPSK EEEDTSFRAF EEGGHEKNKE QGDEDNDAEG AVTVALHIGL PSPSAADLIS  120
RVSSTTVHEE KEVEEDGNGD AIPLGYPAIG RLNKGQYWIP TPSQILIGPT QFSCPVCCKT  180
FNRYNNMQMH MWGHGSQYRR GPESLRGTQP TAMLRLPCYC CAPGCRNNID HPRSKPLKDF  240
RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCICGSDF KHKRSLKDHI  300
KAFGHGHAAY GIDCFEEEDE PSSEIEQDLD HHHHSR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928863.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-139ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2H3YHE50.0A0A2H3YHE5_PHODC; zinc finger protein WIP2-like
STRINGXP_008798774.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-127C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]