PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928852.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 400aa MW: 42838.8 Da PI: 6.3804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928852.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	231	278	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq XP_010928852.1 231 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 278 8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-15	225	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.99E-9	225	282	No hit	No description
PROSITE profile	PS50888	14.526	227	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-14	227	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-6	231	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-8	233	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEPTRSSGDG SGNSGTYTPE IAESLRFEEE IQSLMRENTV HPSLEPSPAG GGSSFTALLG 60 LPANQAVELL HDSESGDSPA AAAAAAASSG GGDMWRFGLR DPKALTLPSG CSPTFPSNAA 120 LVERAARFSI FAAAEESPDV ASVPSHSGDH STKPKAEPPD TECQPICPIP VERQQRPAKR 180 KEAERGNKVK GPAKKSRAAE EGSAKVAEES TGGDKLPYVH VRARRGQATD SHSLAERARR 240 EKINARMKLL QELVPGCSKI SGTALVLDEI INHVQSLQRQ VELLSMRLAA VNPRIDFSGL 300 DNFLSAECGR GMVGNGRGGV GMEQSAWMDA AVVNGGRRQQ QQQQQQIWHL DLVHPHQTPS 360 VWEREDASHL FINPNPGTSL FGYDPASSVL LHSNQLKTEL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEPTRSSGDG SGNSGTYTPE IAESLRFEEE IQSLMRENTV HPSLEPSPAG GGSSFTALLG  60
LPANQAVELL HDSESGDSPA AAAAAAASSG GGDMWRFGLR DPKALTLPSG CSPTFPSNAA  120
LVERAARFSI FAAAEESPDV ASVPSHSGDH STKPKAEPPD TECQPICPIP VERQQRPAKR  180
KEAERGNKVK GPAKKSRAAE EGSAKVAEES TGGDKLPYVH VRARRGQATD SHSLAERARR  240
EKINARMKLL QELVPGCSKI SGTALVLDEI INHVQSLQRQ VELLSMRLAA VNPRIDFSGL  300
DNFLSAECGR GMVGNGRGGV GMEQSAWMDA AVVNGGRRQQ QQQQQQIWHL DLVHPHQTPS  360
VWEREDASHL FINPNPGTSL FGYDPASSVL LHSNQLKTEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928852.1	0.0	transcription factor bHLH48 isoform X1
TrEMBL	A0A2H3XF61	0.0	A0A2H3XF61_PHODC; transcription factor bHLH48-like
STRING	XP_008782895.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-68	bHLH family protein