PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928852.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 42838.8 Da PI: 6.3804 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 231 | 278 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq XP_010928852.1 231 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 278 8*************************9....788889999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-15 | 225 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.99E-9 | 225 | 282 | No hit | No description |
PROSITE profile | PS50888 | 14.526 | 227 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 227 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-6 | 231 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-8 | 233 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEPTRSSGDG SGNSGTYTPE IAESLRFEEE IQSLMRENTV HPSLEPSPAG GGSSFTALLG 60 LPANQAVELL HDSESGDSPA AAAAAAASSG GGDMWRFGLR DPKALTLPSG CSPTFPSNAA 120 LVERAARFSI FAAAEESPDV ASVPSHSGDH STKPKAEPPD TECQPICPIP VERQQRPAKR 180 KEAERGNKVK GPAKKSRAAE EGSAKVAEES TGGDKLPYVH VRARRGQATD SHSLAERARR 240 EKINARMKLL QELVPGCSKI SGTALVLDEI INHVQSLQRQ VELLSMRLAA VNPRIDFSGL 300 DNFLSAECGR GMVGNGRGGV GMEQSAWMDA AVVNGGRRQQ QQQQQQIWHL DLVHPHQTPS 360 VWEREDASHL FINPNPGTSL FGYDPASSVL LHSNQLKTEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928852.1 | 0.0 | transcription factor bHLH48 isoform X1 | ||||
TrEMBL | A0A2H3XF61 | 0.0 | A0A2H3XF61_PHODC; transcription factor bHLH48-like | ||||
STRING | XP_008782895.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-68 | bHLH family protein |