PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928851.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 409aa    MW: 43878 Da    PI: 6.7421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928851.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08231278455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++sLq
  XP_010928851.1 231 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 278
                     8*************************9....788889999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-15225297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.31E-9225282No hitNo description
Gene3DG3DSA:4.10.280.102.0E-14227296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.526227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6231278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-8233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEPTRSSGDG SGNSGTYTPE IAESLRFEEE IQSLMRENTV HPSLEPSPAG GGSSFTALLG  60
LPANQAVELL HDSESGDSPA AAAAAAASSG GGDMWRFGLR DPKALTLPSG CSPTFPSNAA  120
LVERAARFSI FAAAEESPDV ASVPSHSGDH STKPKAEPPD TECQPICPIP VERQQRPAKR  180
KEAERGNKVK GPAKKSRAAE EGSAKVAEES TGGDKLPYVH VRARRGQATD SHSLAERARR  240
EKINARMKLL QELVPGCSKI SGTALVLDEI INHVQSLQRQ VELLSMRLAA VNPRIDFSGL  300
DNFLSAECGR GMVGNGRGGV GMEQSAWMDA AVVNGGRRQQ QQQQQQIWHL DLVHPHQTPS  360
VWEREDASHL FINPNPGTSL FGYDPASSGL FRVLNRVETG KWYVKPGTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928852.10.0transcription factor bHLH48 isoform X1
SwissprotQ8VZ028e-69BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2H3XF610.0A0A2H3XF61_PHODC; transcription factor bHLH48-like
STRINGXP_008782895.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-67bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]