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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_010928827.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family |
C3H |
Protein Properties |
Length: 297aa MW: 31128.3 Da PI: 9.7649 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010928827.1 | genome | OG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + C++G++C+FaHg+
XP_010928827.1 101 KTKMCNKYNTAEGCRFGEKCHFAHGE 126
899*********************96 PP
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2 | zf-CCCH | 37 | 5.5e-12 | 264 | 288 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC +f++ G C +G+rC+FaHg
XP_010928827.1 264 YKTKLCENFSK-GSCTFGERCHFAHG 288
9**********.*************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 4.8 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.6 | 42 | 59 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-14 | 96 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.098 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 99 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.076 | 105 | 125 | No hit | No description |
SuperFamily | SSF54791 | 1.9E-15 | 163 | 241 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.2E-11 | 169 | 239 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.047 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.0E-15 | 170 | 238 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.86E-14 | 172 | 234 | No hit | No description |
Pfam | PF00013 | 1.5E-10 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-16 | 261 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-7 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.765 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-9 | 263 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 264 | 288 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
METARKRMRP EAANGGAAGQ KRLKETESFQ PGLGSKSKPC TKFFSTAGCP FGEGCHFLHY 60 VPGGIQAVAQ MTNLGNPAVP PTRNPVLPPA IPDGPPGPAV KTKMCNKYNT AEGCRFGEKC 120 HFAHGERELG RPIPATHDGP MAPPMGGRLA GRLEPXPPAG LPATASFGAS ATAKISVDAS 180 LAGAIIGKGG VNTKQICRIT GVRLAIRDHE SDPNLRNIEL EGTFDQIKHA SGMVRELIVN 240 ISSNTPLPVK NPAGAAPGGP GNNYKTKLCE NFSKGSCTFG ERCHFAHGAN ELRKTSA
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