PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928738.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 461aa    MW: 50101.5 Da    PI: 8.3614
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928738.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.7e-41173250178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC++dls ak+yhr+h+vCe hsk+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  XP_010928738.1 173 CCQVEGCNSDLSGAKDYHRKHRVCENHSKSPRVIVAGQERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 250
                     6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-33166235IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496171248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38172254IPR004333Transcription factor, SBP-box
PfamPF031101.1E-31174247IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEWNTKTSSL WEWDNLAVFS GNSKQEPQTG WKIEVKGAGG IENGSLFSSG GGGSSGGGAC  60
SGSDLGNGSS SKSSISASID SSSKAGVKIS EFNFEAVNKD SMRVQDGGLS AAAAGSQEAL  120
IGLKLGKRTY FEDVCAGSNF KNPPSSSSSV SVAPPASLVK KPRVTQQAVQ STCCQVEGCN  180
SDLSGAKDYH RKHRVCENHS KSPRVIVAGQ ERRFCQQCSR FHDLSEFDQK KRSCRRRLSD  240
HNARRRKPQP DTISFNSTRL SSPFYDDRQN FLWNQAPFGQ MRPVTSMWES SCDFKVTQMK  300
GSWMKSAKVE SIDGQLHPPN SQRSNAFSTL CHEVDRLLPM KGITAEVINQ GPEASLTASN  360
LDGAPDLRRA LSLLSANAWG SADSGTTSSL IQLVHANHTS AAQPAIHAVN STSEYWQDEH  420
ALAQQGRVLQ FPTHSNGSQF QEFQLLKSPY ETTFFDSSQI H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-271742471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229246KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928735.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_010928736.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_010928738.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_029122028.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_029122029.10.0squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2YGR51e-104SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A2H3XW150.0A0A2H3XW15_PHODC; squamosa promoter-binding-like protein 3
STRINGXP_008789607.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-50squamosa promoter binding protein-like 2