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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_010928737.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
SBP |
| Protein Properties |
Length: 461aa MW: 50101.5 Da PI: 8.3614 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010928737.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 130.1 | 7.7e-41 | 173 | 250 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+CqvegC++dls ak+yhr+h+vCe hsk+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
XP_010928737.1 173 CCQVEGCNSDLSGAKDYHRKHRVCENHSKSPRVIVAGQERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 250
6**************************************************************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MEWNTKTSSL WEWDNLAVFS GNSKQEPQTG WKIEVKGAGG IENGSLFSSG GGGSSGGGAC 60
SGSDLGNGSS SKSSISASID SSSKAGVKIS EFNFEAVNKD SMRVQDGGLS AAAAGSQEAL 120
IGLKLGKRTY FEDVCAGSNF KNPPSSSSSV SVAPPASLVK KPRVTQQAVQ STCCQVEGCN 180
SDLSGAKDYH RKHRVCENHS KSPRVIVAGQ ERRFCQQCSR FHDLSEFDQK KRSCRRRLSD 240
HNARRRKPQP DTISFNSTRL SSPFYDDRQN FLWNQAPFGQ MRPVTSMWES SCDFKVTQMK 300
GSWMKSAKVE SIDGQLHPPN SQRSNAFSTL CHEVDRLLPM KGITAEVINQ GPEASLTASN 360
LDGAPDLRRA LSLLSANAWG SADSGTTSSL IQLVHANHTS AAQPAIHAVN STSEYWQDEH 420
ALAQQGRVLQ FPTHSNGSQF QEFQLLKSPY ETTFFDSSQI H
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 229 | 246 | KKRSCRRRLSDHNARRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
