PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 241aa MW: 27921.7 Da PI: 7.3942 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 9.7e-21 | 67 | 120 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ eLA+klgL+ rqV vWFqNrRa++k XP_010928609.1 67 KKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 120 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.8 | 2.6e-42 | 66 | 155 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr++ XP_010928609.1 66 EKKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNDRLRSQ 155 69*************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 18.058 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-20 | 65 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.67E-18 | 67 | 123 | No hit | No description |
SuperFamily | SSF46689 | 2.47E-19 | 67 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.6E-18 | 67 | 120 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-22 | 68 | 129 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.2E-7 | 93 | 102 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.2E-7 | 102 | 118 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-13 | 122 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDSGHLIFDS SSSHHGRMLL LGGGSPIFQG ARSVLGMEEG ANKRRLFFTS PDELLEEEYY 60 DEQLPEKKRR LTPEQVHLLE RSFEAENKLE PERKSELARK LGLQPRQVAV WFQNRRARWK 120 TKQLERDFDR LKSSYDSLLA DHDSLLKDND RLRSQDCRNK TLHHRTSRDG TRSTTPGESI 180 SVIPFNFDGT LVLYLSNISI EWMIIMTDMP LIAMHGKGDA FFGLGGGLLF WKIYEHLFFP 240 H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029121995.1 | 1e-161 | pituitary homeobox 3 isoform X1 | ||||
Swissprot | Q02283 | 9e-64 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q6YWR4 | 1e-63 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A2H3XD95 | 1e-87 | A0A2H3XD95_PHODC; homeobox-leucine zipper protein HOX16 isoform X1 | ||||
STRING | XP_008781998.1 | 2e-88 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-66 | homeobox 1 |
Publications ? help Back to Top | |||
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