PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010928474.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 337aa MW: 37014.8 Da PI: 9.4997

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928474.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	5e-07	208	251	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+ r+RR+ri ++ L +l+P+ ++++ ++L++A +Y++ L+ XP_010928474.1 208 EIARQRRKRISDRTRILETLMPWE-----RRMDTGTMLQEAHKYVQFLE 251 788******************9.....79************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.639	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.05E-6	204	254	No hit	No description
SuperFamily	SSF47459	1.19E-9	206	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	207	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-7	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	208	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEREIPTGVL VSSANAAAIA AEERRRTVPM LPTAASFPAG ALPFYAIESG VSSSQIGCSP 60 APYPDQLDFG FFAEDLAALP QCHLVECIAC MDPRLKLKSP KVEPPANGKQ AWISPEIGSY 120 GFHRLPGLQS LEPLPEAAKK SPISPRLSGD LISIIELSHK RFHPSSPPTT HAPSPPPPPP 180 LRSPSTCYAF QRRGAAARNL RPAVPSSEIA RQRRKRISDR TRILETLMPW ERRMDTGTML 240 QEAHKYVQFL EAQVTALQTM PCSSGFAPVH LPAGRFRGLE LLNRQQLLQV MMNSPVVQDM 300 LYQKGLCVFS AEQVAALRQA EEQRPQVIRL LSSSVTK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928474.1	0.0	uncharacterized protein LOC105050231
TrEMBL	A0A2H3WZQ5	1e-179	A0A2H3WZQ5_PHODC; transcription factor bHLH53
STRING	XP_008776122.1	1e-180	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24985	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	3e-26	bHLH family protein