PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928462.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 570aa    MW: 64454.1 Da    PI: 6.2095
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928462.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.93.2e-1302015692373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L++cAea+++++ ++ + l+++ +  +s  g+p+qRl ay++e+L ar  +s++++y+al++++ +   s+e l++++++++++P++kf+++
  XP_010928462.1 201 KQMLIRCAEALTENKINEFEMLVQEARSYVSIFGEPIQRLGAYMLEGLVARHESSGTNIYHALRCQQPE---SKELLSYMRILYDICPYFKFGYM 292
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + + l+ +g+ L+++ +++++p+efn+l +    ++
  XP_010928462.1 293 AANGAIAEALRHEDRIHIIDFQIAQGTQWVTLIQALAARPAGPPHVRITGIDDPVSEyaRGDGLQLVGKMLSDMSKKFNIPLEFNAL-TVYGPQV 386
                     ******************************************************999999**************************6.7779999 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+++n+++Fl rfle+l+yysa+f+s++++lpr+++eri 
  XP_010928462.1 387 TREMLDIRPGEALAVNFTLQLHQTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESNTNTTPFLMRFLETLDYYSAMFESIDVTLPRDNKERIH 481
                     9********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+++ivn++aceg+er+erhe l+kWr+rl++aGFkp+pl +++++ +k+ll  ++ d y++ e++g+++lgWk+r+L+s+SaW
  XP_010928462.1 482 VEQHCLAKDIVNIIACEGKERVERHELLGKWRSRLTMAGFKPYPLISYVNSVIKTLLGYYS-DKYTLVEKDGAMLLGWKNRNLISASAW 569
                     *********************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.946174551IPR005202Transcription factor GRAS
PfamPF035141.1E-127201569IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDSHQLFKYG LTGADVSCEF PSPRTLAYTE WALGPIKFGT GNSPNSPLSS KFESVLSNSQ  60
EQHSSTESIS GVSLSQYSPL ETNSSFKQTH IHRSECVQVP SNSSYAVSSQ SMRHALQEIE  120
TVLMAPDTDE TTTSTNLESD ENKQPQLRKQ PSTTWSHESC MEPPAVVQPQ YISGRYSKPS  180
HEARPEKRLR EMREFPQNDV KQMLIRCAEA LTENKINEFE MLVQEARSYV SIFGEPIQRL  240
GAYMLEGLVA RHESSGTNIY HALRCQQPES KELLSYMRIL YDICPYFKFG YMAANGAIAE  300
ALRHEDRIHI IDFQIAQGTQ WVTLIQALAA RPAGPPHVRI TGIDDPVSEY ARGDGLQLVG  360
KMLSDMSKKF NIPLEFNALT VYGPQVTREM LDIRPGEALA VNFTLQLHQT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESNTNTTPF LMRFLETLDY YSAMFESIDV TLPRDNKERI  480
HVEQHCLAKD IVNIIACEGK ERVERHELLG KWRSRLTMAG FKPYPLISYV NSVIKTLLGY  540
YSDKYTLVEK DGAMLLGWKN RNLISASAWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6820656925378Protein SCARECROW
5b3h_A1e-6820656924377Protein SCARECROW
5b3h_D1e-6820656924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928462.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2H3WZP80.0A0A2H3WZP8_PHODC; chitin-inducible gibberellin-responsive protein 1-like
STRINGXP_008776123.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]