PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928164.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 412aa MW: 46599.9 Da PI: 7.0096

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928164.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	396.5	2.8e-121	38	411	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cAe ++ d ++a+++L+ ls+++sp+gd++ Rl++ f++AL+ r+ r ++l + +s s+++ + + +++ +++v+P+l+f+hlt XP_010928164.1 38 QLLISCAELIHRADYSAARRILSLLSTICSPHGDSTDRLVHQFARALSLRIDRVLTHLIS---SSMFSSNEDTIQSSSYLSLNKVTPFLRFAHLT 129 79*************************************************6666654...444444445666678888********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.....vakr 185 aNqaIlea++g + +Hi+Dfd s+G+QWp++lqa+a+R+ ++ s+RiTg g + + l++tg+rL+ fA++lg++f+f++l ++ XP_010928164.1 130 ANQAILEAIDGRRSIHILDFDTSHGVQWPPFLQAMAERSdpSSLQSIRITGTGT----DLDVLHRTGDRLQAFANSLGLRFQFHPLylpttNPDA 220 ***********************************445566*****....************************765422222 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +++ ++++++pgE+laVn++l lh+ll++++ + + ++L++vk ++P vv+v+e+ea hns+ Fl+rf+eal++y+a+f+slea+lp++ XP_010928164.1 221 TTTSLNSSFQLHPGETLAVNCILFLHKLLRDRTGDDPacKLVAFLHAVKAMNPVVVTVAEREATHNSPVFLRRFMEALDHYTAVFESLEATLPPK 315 2222345679999************88777666578899************************************************ PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 s er vE+++lgrei+++v eg+ r+erhe++e W+ +++ GF+++pls +a +qaklllr ++ s+gy+++ +++sl+lgW+++pL+svS+ XP_010928164.1 316 SPERLEVEQVWLGREIEDIVGREGEGRKERHERFEWWEGLMRDRGFSSLPLSPFALSQAKLLLRLHYpSEGYQLQMSKNSLFLGWQHKPLFSVSS 410 ********************************************************************************************* PP GRAS 373 W 373 W XP_010928164.1 411 W 411 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.716	10	391	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.8E-119	38	411	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MLTSLNSHRD EEEGTHHHHP NHQILPHGLI APSTHSCQLL ISCAELIHRA DYSAARRILS 60 LLSTICSPHG DSTDRLVHQF ARALSLRIDR VLTHLISSSM FSSNEDTIQS SSYLSLNKVT 120 PFLRFAHLTA NQAILEAIDG RRSIHILDFD TSHGVQWPPF LQAMAERSDP SSLQSIRITG 180 TGTDLDVLHR TGDRLQAFAN SLGLRFQFHP LYLPTTNPDA TTTSLNSSFQ LHPGETLAVN 240 CILFLHKLLR DRTGDDPACK LVAFLHAVKA MNPVVVTVAE REATHNSPVF LRRFMEALDH 300 YTAVFESLEA TLPPKSPERL EVEQVWLGRE IEDIVGREGE GRKERHERFE WWEGLMRDRG 360 FSSLPLSPFA LSQAKLLLRL HYPSEGYQLQ MSKNSLFLGW QHKPLFSVSS WH

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MLTSLNSHRD EEEGTHHHHP NHQILPHGLI APSTHSCQLL ISCAELIHRA DYSAARRILS  60
LLSTICSPHG DSTDRLVHQF ARALSLRIDR VLTHLISSSM FSSNEDTIQS SSYLSLNKVT  120
PFLRFAHLTA NQAILEAIDG RRSIHILDFD TSHGVQWPPF LQAMAERSDP SSLQSIRITG  180
TGTDLDVLHR TGDRLQAFAN SLGLRFQFHP LYLPTTNPDA TTTSLNSSFQ LHPGETLAVN  240
CILFLHKLLR DRTGDDPACK LVAFLHAVKA MNPVVVTVAE REATHNSPVF LRRFMEALDH  300
YTAVFESLEA TLPPKSPERL EVEQVWLGRE IEDIVGREGE GRKERHERFE WWEGLMRDRG  360
FSSLPLSPFA LSQAKLLLRL HYPSEGYQLQ MSKNSLFLGW QHKPLFSVSS WH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-58	38	412	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928164.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-121	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2H3ZBT1	0.0	A0A2H3ZBT1_PHODC; scarecrow-like protein 18
STRING	XP_008811155.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-111	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]