PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 518aa MW: 57003 Da PI: 7.289 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.9 | 7.5e-18 | 234 | 283 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P+ ++K +Ka+ L +++eYI+ Lq XP_010928118.1 234 RSKHSATEQRRRSKINDRFQILRELIPHT----DQKRDKASFLLEVIEYIRFLQ 283 889*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-19 | 230 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-24 | 231 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.888 | 232 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-16 | 234 | 287 | No hit | No description |
Pfam | PF00010 | 2.7E-15 | 234 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 238 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MELQGKKATY DFLSLYNKDS SFPHPDPRPP SQGFFLTTHD FLKPLERADK GHRHEAASGD 60 AAVGRVGSAA SVEHVLPGGI GTYSVSHVSD PVPLAMVKPE RGTCRGVDVE RKPEAYYDNG 120 VSYGSPFPAA VPVTLWDESA AKDPWSRGQW PSPFTARGSG GFGTLSDSRN HPALEKKRLM 180 ESASRSSKGF DEEEEEEEEE ESGRREGSSS HKELTVKVDG KNRGDNDQKP GTPRSKHSAT 240 EQRRRSKIND RFQILRELIP HTDQKRDKAS FLLEVIEYIR FLQEKVQKYE SSYLGWNQDN 300 ANLMPWVKVY FRSFWKNARN NNQSTGDGVS DPSQVIRNGS ASPGYMFSGN DNSIPVAPAM 360 LSTAQTLTES DMAAGVSHRA VETPANFANA DNMTTLAQPR WLRSSGQLDH AVSHEILNEQ 420 EELTINEGTI SVSSAYSQAL LTTLAQVLQS SGIDLSQASI SVQINLGKRA INKRLAATSN 480 AKDHEDPAST NQAMGHSTLG SNAKQSLQTR KRRKTNNS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928118.1 | 0.0 | transcription factor BIM2 isoform X3 | ||||
TrEMBL | A0A2H3XUF1 | 0.0 | A0A2H3XUF1_PHODC; transcription factor BIM2 isoform X5 | ||||
STRING | XP_008809668.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 3e-55 | bHLH family protein |