PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928118.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 518aa    MW: 57003 Da    PI: 7.289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928118.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.5e-18234283255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lrel+P+     ++K +Ka+ L +++eYI+ Lq
  XP_010928118.1 234 RSKHSATEQRRRSKINDRFQILRELIPHT----DQKRDKASFLLEVIEYIRFLQ 283
                     889*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-19230302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-24231306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-16234287No hitNo description
PfamPF000102.7E-15234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MELQGKKATY DFLSLYNKDS SFPHPDPRPP SQGFFLTTHD FLKPLERADK GHRHEAASGD  60
AAVGRVGSAA SVEHVLPGGI GTYSVSHVSD PVPLAMVKPE RGTCRGVDVE RKPEAYYDNG  120
VSYGSPFPAA VPVTLWDESA AKDPWSRGQW PSPFTARGSG GFGTLSDSRN HPALEKKRLM  180
ESASRSSKGF DEEEEEEEEE ESGRREGSSS HKELTVKVDG KNRGDNDQKP GTPRSKHSAT  240
EQRRRSKIND RFQILRELIP HTDQKRDKAS FLLEVIEYIR FLQEKVQKYE SSYLGWNQDN  300
ANLMPWVKVY FRSFWKNARN NNQSTGDGVS DPSQVIRNGS ASPGYMFSGN DNSIPVAPAM  360
LSTAQTLTES DMAAGVSHRA VETPANFANA DNMTTLAQPR WLRSSGQLDH AVSHEILNEQ  420
EELTINEGTI SVSSAYSQAL LTTLAQVLQS SGIDLSQASI SVQINLGKRA INKRLAATSN  480
AKDHEDPAST NQAMGHSTLG SNAKQSLQTR KRRKTNNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928118.10.0transcription factor BIM2 isoform X3
TrEMBLA0A2H3XUF10.0A0A2H3XUF1_PHODC; transcription factor BIM2 isoform X5
STRINGXP_008809668.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.43e-55bHLH family protein