PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_010928086.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YB

Protein Properties

Length: 249aa MW: 27105.5 Da PI: 7.06

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928086.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171.1	1.2e-53	56	151	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqdrf+Pianv+rim+kvlP +akis+daket+qecvsefisf+t+ea+++cqre+rkti+++d++wa+++lGf+dyv+pl+ yl++yreleg+ XP_010928086.1 56 REQDRFMPIANVIRIMRKVLPLHAKISDDAKETIQECVSEFISFITGEANERCQREHRKTITAEDVIWAMGKLGFDDYVAPLSRYLQRYRELEGD 150 89********************************************************************************************9 PP NF-YB 97 k 97 + XP_010928086.1 151 Q 151 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-49	52	153	IPR009072	Histone-fold
SuperFamily	SSF47113	9.01E-38	58	153	IPR009072	Histone-fold
Pfam	PF00808	2.9E-25	61	125	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.5E-15	89	107	No hit	No description
PROSITE pattern	PS00685	0	92	108	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.5E-15	108	126	No hit	No description
PRINTS	PR00615	4.5E-15	127	145	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MARPFASGVN SSQAGPAGGV DADQSGPTAG NPVLPGSTAR ATATSSTTQP QVGNLREQDR 60 FMPIANVIRI MRKVLPLHAK ISDDAKETIQ ECVSEFISFI TGEANERCQR EHRKTITAED 120 VIWAMGKLGF DDYVAPLSRY LQRYRELEGD QRAGLRGEHF PIIKQRRHPQ ISDTGRATDV 180 GAQPLSMRSP PPQAPPPSNL VMPPIVPPPR VNHLFGEDPR AGYFLEMYWG GDGSGSSNSG 240 APPMPDFFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-55	54	146	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928085.1	0.0	nuclear transcription factor Y subunit B-2 isoform X1
Refseq	XP_010928086.1	0.0	nuclear transcription factor Y subunit B-2 isoform X2
Refseq	XP_010928087.1	0.0	nuclear transcription factor Y subunit B-2 isoform X2
TrEMBL	A0A2H3YXS8	1e-138	A0A2H3YXS8_PHODC; nuclear transcription factor Y subunit B-10
STRING	XP_008805507.1	1e-139	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-58	nuclear factor Y, subunit B6