PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928085.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 269aa    MW: 29074.8 Da    PI: 8.2358
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928085.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.91.5e-5376171297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrf+Pianv+rim+kvlP +akis+daket+qecvsefisf+t+ea+++cqre+rkti+++d++wa+++lGf+dyv+pl+ yl++yreleg+
  XP_010928085.1  76 REQDRFMPIANVIRIMRKVLPLHAKISDDAKETIQECVSEFISFITGEANERCQREHRKTITAEDVIWAMGKLGFDDYVAPLSRYLQRYRELEGD 170
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     +
  XP_010928085.1 171 Q 171
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.4E-4972173IPR009072Histone-fold
SuperFamilySSF471131.1E-3778173IPR009072Histone-fold
PfamPF008083.4E-2581145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-15109127No hitNo description
PROSITE patternPS006850112128IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.4E-15128146No hitNo description
PRINTSPR006155.4E-15147165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAGASNGIPA FPRLPRTSSG MARPFASGVN SSQAGPAGGV DADQSGPTAG NPVLPGSTAR  60
ATATSSTTQP QVGNLREQDR FMPIANVIRI MRKVLPLHAK ISDDAKETIQ ECVSEFISFI  120
TGEANERCQR EHRKTITAED VIWAMGKLGF DDYVAPLSRY LQRYRELEGD QRAGLRGEHF  180
PIIKQRRHPQ ISDTGRATDV GAQPLSMRSP PPQAPPPSNL VMPPIVPPPR VNHLFGEDPR  240
AGYFLEMYWG GDGSGSSNSG APPMPDFFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-5574166597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928085.10.0nuclear transcription factor Y subunit B-2 isoform X1
TrEMBLA0A2H3YXS81e-138A0A2H3YXS8_PHODC; nuclear transcription factor Y subunit B-10
STRINGXP_008805507.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.25e-58nuclear factor Y, subunit B6