PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927987.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 515aa MW: 55009.5 Da PI: 7.2624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927987.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.2e-09	336	384	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_010927987.1 336 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 384 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.81E-11	331	388	No hit	No description
SuperFamily	SSF47459	7.33E-17	331	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-16	334	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-6	336	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MDISKKDKLG VEKSGDHPNY HSSGMSADQQ LGNPSISLVS AHPMVSSPCP SVSMVESFPP 60 SLWNPSAHSQ NSGFCGNNVQ SSMAASDSMP VGKPVPGPLR LDMGWNPLDS SSKGSGIFLQ 120 TGSGVLPPSL PHFPTDSAFI EHPARFSGFH GGNLNGMVSP FSTAESLSSY CNTPKGVLGA 180 QIQQSKMNTT EARMDASLPI DHGSSSRSPR KEQRDKGSLH GAGVSGNESG EHVFGGGGRE 240 EAPNLASPAG DSSSKGLAAK KRRRSDQGIE AEQLQGGASL PSVDTTKDNL DTKQKPEQNS 300 STMATVKSNG KQVNDSSDAP KEDCIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQDLV 360 PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPR LEFNIEGLVS KDLFHSRGGP 420 SSSIGFSPDM IHPQLHPSQQ ALFQAGMSSI VNPSDALRTA INAQLSSING YKEPMPQIPN 480 AWNEELHNVM QMTFGPNPSL NTQELNGKPC EGFPM

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MDISKKDKLG VEKSGDHPNY HSSGMSADQQ LGNPSISLVS AHPMVSSPCP SVSMVESFPP  60
SLWNPSAHSQ NSGFCGNNVQ SSMAASDSMP VGKPVPGPLR LDMGWNPLDS SSKGSGIFLQ  120
TGSGVLPPSL PHFPTDSAFI EHPARFSGFH GGNLNGMVSP FSTAESLSSY CNTPKGVLGA  180
QIQQSKMNTT EARMDASLPI DHGSSSRSPR KEQRDKGSLH GAGVSGNESG EHVFGGGGRE  240
EAPNLASPAG DSSSKGLAAK KRRRSDQGIE AEQLQGGASL PSVDTTKDNL DTKQKPEQNS  300
STMATVKSNG KQVNDSSDAP KEDCIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQDLV  360
PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPR LEFNIEGLVS KDLFHSRGGP  420
SSSIGFSPDM IHPQLHPSQQ ALFQAGMSSI VNPSDALRTA INAQLSSING YKEPMPQIPN  480
AWNEELHNVM QMTFGPNPSL NTQELNGKPC EGFPM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927987.1	0.0	transcription factor bHLH49-like
TrEMBL	A0A2H3Z1B5	0.0	A0A2H3Z1B5_PHODC; transcription factor bHLH49-like isoform X1
STRING	XP_008807015.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-92	bHLH family protein