PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 402aa MW: 44214.3 Da PI: 9.0062

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927887.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.5e-09	204	262	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+k+++L++e +L +l l+ l++e+ XP_010927887.1 204 KRAKRIWANRQSAARSKERKMRYIAELEQKAQSLQTETATLSAQLTLLRRDTNGLTAEN 262 9*********************************************9999888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-14	200	264	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	202	265	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.4E-8	202	253	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-10	204	258	No hit	No description
SuperFamily	SSF57959	4.85E-10	204	255	No hit	No description
CDD	cd14703	6.92E-22	205	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDKARAPVHG GSVDFPPNSS RFSTASLSKF PVMGDPSPSS SSQANPESSH AGQLSHDISH 60 MLDFPRRNPG HRRALSEIPS LPDDTSFYSD LGVVGTHDGT DDTDEDFFSA YLDIEKLNSS 120 CAWSSVLSGG EPSGPAAAPP APSQTENLAS GSHERPRVRH QHSQSMDGSS LVLLGLSGEG 180 AAPAEMKKAI SAAKLADLAL VDPKRAKRIW ANRQSAARSK ERKMRYIAEL EQKAQSLQTE 240 TATLSAQLTL LRRDTNGLTA ENSELKLRLQ TMEQQVRLQD ALNDALREEV HRLKLATGQM 300 MPNGGPLMKF GSPLLGASQQ FYHHNQAMQS LLAGHQFQQL QIHPQHQQQL HPIQSLQQRH 360 MHPPQPQQQQ QQPPADPRMK RPMTSRNLRG EKTSDNSSNR KE

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDKARAPVHG GSVDFPPNSS RFSTASLSKF PVMGDPSPSS SSQANPESSH AGQLSHDISH  60
MLDFPRRNPG HRRALSEIPS LPDDTSFYSD LGVVGTHDGT DDTDEDFFSA YLDIEKLNSS  120
CAWSSVLSGG EPSGPAAAPP APSQTENLAS GSHERPRVRH QHSQSMDGSS LVLLGLSGEG  180
AAPAEMKKAI SAAKLADLAL VDPKRAKRIW ANRQSAARSK ERKMRYIAEL EQKAQSLQTE  240
TATLSAQLTL LRRDTNGLTA ENSELKLRLQ TMEQQVRLQD ALNDALREEV HRLKLATGQM  300
MPNGGPLMKF GSPLLGASQQ FYHHNQAMQS LLAGHQFQQL QIHPQHQQQL HPIQSLQQRH  360
MHPPQPQQQQ QQPPADPRMK RPMTSRNLRG EKTSDNSSNR KE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927887.1	0.0	transcription factor RF2a
Swissprot	Q04088	1e-111	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2H3XSP8	1e-154	A0A2H3XSP8_PHODC; transcription factor RF2a-like
STRING	XP_008790677.1	1e-175	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	3e-90	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]