PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927433.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 373aa MW: 40187.1 Da PI: 6.6228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927433.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.6	6.9e-16	113	159	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_010927433.1 113 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 159 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-20	106	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.55E-21	106	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	109	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-17	112	163	No hit	No description
Pfam	PF00010	2.4E-13	113	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGDPNSNSSG GSSSATWSFS GPSPSSTSSS SGQHHQGLIS LMGHVPPPPA VQMLLPSCRP 60 SSGVGGGGLS LPQGQDLEPH DCESEEGVEV GEEPAKPVPS RGSGSKRSRA AEVHNLSEKR 120 RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLSMRNG LNHPMYLFGA 180 LQPFPASQMC MGFGADNGTA MSMGVGVLPP NQDSAARNSF DPSNQSTPSH ESIVIPSVKN 240 VTNPENSCKM GPSHSQQAPF QLPVSAEIFT GDMVTRRQLA AGQTTRNLPE NEMKCMAVAA 300 SQRFGGQPSS LVDDNLEECV IGRERAEDMP SKDPENRSFV QHLHGLEEGF PVLMQRKNHC 360 IFEAHHHGLR MLC

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGDPNSNSSG GSSSATWSFS GPSPSSTSSS SGQHHQGLIS LMGHVPPPPA VQMLLPSCRP  60
SSGVGGGGLS LPQGQDLEPH DCESEEGVEV GEEPAKPVPS RGSGSKRSRA AEVHNLSEKR  120
RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLSMRNG LNHPMYLFGA  180
LQPFPASQMC MGFGADNGTA MSMGVGVLPP NQDSAARNSF DPSNQSTPSH ESIVIPSVKN  240
VTNPENSCKM GPSHSQQAPF QLPVSAEIFT GDMVTRRQLA AGQTTRNLPE NEMKCMAVAA  300
SQRFGGQPSS LVDDNLEECV IGRERAEDMP SKDPENRSFV QHLHGLEEGF PVLMQRKNHC  360
IFEAHHHGLR MLC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019708023.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform X4
TrEMBL	A0A2H3Y6F9	1e-180	A0A2H3Y6F9_PHODC; transcription factor SPATULA-like isoform X5
STRING	XP_008793886.1	1e-169	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	8e-35	bHLH family protein