PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927432.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 374aa MW: 40286.2 Da PI: 6.6228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927432.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.6	6.9e-16	114	160	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_010927432.1 114 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 160 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-20	107	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-21	107	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	110	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.02E-17	113	164	No hit	No description
Pfam	PF00010	2.4E-13	114	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	116	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGDPNSNSSG GSSSATWSFS GPSPSSTSSS SGQHHQGLIS LMGHVPPPPA VQMLLPSCRP 60 SSGVGGGGLS LPQGQDLEPH DCESEVEGVE VGEEPAKPVP SRGSGSKRSR AAEVHNLSEK 120 RRRSRINEKM KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLSMRN GLNHPMYLFG 180 ALQPFPASQM CMGFGADNGT AMSMGVGVLP PNQDSAARNS FDPSNQSTPS HESIVIPSVK 240 NVTNPENSCK MGPSHSQQAP FQLPVSAEIF TGDMVTRRQL AAGQTTRNLP ENEMKCMAVA 300 ASQRFGGQPS SLVDDNLEEC VIGRERAEDM PSKDPENRSF VQHLHGLEEG FPVLMQRKNH 360 CIFEAHHHGL RMLC

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGDPNSNSSG GSSSATWSFS GPSPSSTSSS SGQHHQGLIS LMGHVPPPPA VQMLLPSCRP  60
SSGVGGGGLS LPQGQDLEPH DCESEVEGVE VGEEPAKPVP SRGSGSKRSR AAEVHNLSEK  120
RRRSRINEKM KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLSMRN GLNHPMYLFG  180
ALQPFPASQM CMGFGADNGT AMSMGVGVLP PNQDSAARNS FDPSNQSTPS HESIVIPSVK  240
NVTNPENSCK MGPSHSQQAP FQLPVSAEIF TGDMVTRRQL AAGQTTRNLP ENEMKCMAVA  300
ASQRFGGQPS SLVDDNLEEC VIGRERAEDM PSKDPENRSF VQHLHGLEEG FPVLMQRKNH  360
CIFEAHHHGL RMLC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019708022.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform X3
TrEMBL	A0A2H3Y6F9	0.0	A0A2H3Y6F9_PHODC; transcription factor SPATULA-like isoform X5
STRING	XP_008793886.1	1e-169	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3336	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	8e-35	bHLH family protein