PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927413.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 579aa    MW: 62981.5 Da    PI: 6.5755
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927413.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.41.8e-25118219199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a+++        +++   +t++++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  +++
  XP_010927413.1 118 FAKILTPSDANNGGGFSVPRFCADSIfpgldfkAEPPV--QTISVRDVHGTRWEFRHIYRGTPRRHLLTTGWSKFVNCKKLVAGDSVVFM--KND 208
                     89*********************999****98544444..49************************************************..779 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                      +el+v+v+r+
  XP_010927413.1 209 AGELFVGVRRT 219
                     99******996 PP
2Auxin_resp86.16.8e-29267350183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ a+++ +Fev+Y+Pra++++Fvv  e ve+a+++ +s+G R+km++eted  + ++ +Gtv++   +d   Wp+S+Wr+L+
  XP_010927413.1 267 AVKLAEMNHPFEVLYYPRAGSPDFVVAEEVVESAMRMYWSAGVRVKMSMETEDLLRMTWfQGTVSSAAVSDVGPWPGSPWRMLQ 350
                     6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-29114227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-21117218No hitNo description
Gene3DG3DSA:2.40.330.109.5E-34117221IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.9E-19118220IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126118220IPR003340B3 DNA binding domain
PfamPF023623.5E-23118219IPR003340B3 DNA binding domain
PfamPF065075.3E-26267350IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAPAADVTEL RSVDPYVWKA CAGTAAKIPA VGSRVYYFPQ GHAEQSSCQP DFSAVRCCRS  60
FVLCTVSAVR FLASPDSDEV FAQIALDPRF PPPPLVPVPA DTPDGVGGNG GGGGVVSFAK  120
ILTPSDANNG GGFSVPRFCA DSIFPGLDFK AEPPVQTISV RDVHGTRWEF RHIYRGTPRR  180
HLLTTGWSKF VNCKKLVAGD SVVFMKNDAG ELFVGVRRTG RSCGSVDYLP YSTPAGAGVK  240
LEENLGSGEG FSRNVRGRVP ASSVVEAVKL AEMNHPFEVL YYPRAGSPDF VVAEEVVESA  300
MRMYWSAGVR VKMSMETEDL LRMTWFQGTV SSAAVSDVGP WPGSPWRMLQ VTWDEPEVLQ  360
NVRSVSPWQV ELVSATPQLQ TPCPVMKKLR GAQSQDIFGD EEGNVLFPLT DLKSKSMGNL  420
SPLINYHTFP AGMQGARHDL ICFPTLSNFV PLSAHQMLSD NLNGINMPEK SNNVSNNLNV  480
GSKEGSSTFS HRSIVDCGTD LLNTVACNPT RKTSGGSFQL FGQIIQIEQP VDVDADKKYR  540
ETTHGVLPHD FSISNQRKQL IYGLDVQCQR VSALEACFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-701337151388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927413.10.0auxin response factor 17
RefseqXP_029121698.10.0auxin response factor 17
TrEMBLA0A2H3Y6H90.0A0A2H3Y6H9_PHODC; Auxin response factor
STRINGXP_008793917.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2255223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-148auxin response factor 17