PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010927333.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1252aa MW: 141593 Da PI: 8.3885

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927333.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.7	2e-13	12	63	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + t++ql+ Le+++ +++yp++++ ee A++l+Lt +q+++WF rR kek+ XP_010927333.1 12 KKTQTQLQSLEKFYSEEKYPKQKALEEYATSLNLTYSQIRTWFVERRRKEKR 63 5699***********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.479	4	64	IPR001356	Homeobox domain
SMART	SM00389	2.5E-10	6	68	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.7E-13	9	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-12	10	69	IPR009057	Homeodomain-like
Pfam	PF00046	8.2E-11	12	63	IPR001356	Homeobox domain
CDD	cd00086	5.40E-9	21	65	No hit	No description
SMART	SM00571	1.0E-7	435	494	IPR018501	DDT domain
PROSITE profile	PS50827	11.237	435	494	IPR018501	DDT domain
Pfam	PF02791	2.5E-8	437	489	IPR018501	DDT domain
Pfam	PF15612	1.2E-7	718	757	IPR028942	WHIM1 domain
Pfam	PF15613	2.6E-10	861	933	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1252 aa Download sequence Send to blast
MMISMQIKTT KKKTQTQLQS LEKFYSEEKY PKQKALEEYA TSLNLTYSQI RTWFVERRRK 60 EKRENEALSN SKSSESVQPE SDQSNDSALF AVDRHVGRKD KHSAPMMRRK DISGQGEIKG 120 HTLLICDELQ NPESTCLKKR FSAGYSNQLV RHKDRHNISG QQMKNSLGGR VYRAEKKHLV 180 RLQVLFSKDH ILKKVFRKDG PPLGVEFDPL PANVFGQRTG SQNLQSCRES QKSLKRRKVS 240 ESPMADPVTS HERNVPERKY GIGKGLMTVW HATNSGSGKI PTGIDFVDGS ESWMLFTSNA 300 SLKETSCQVS KGMRQRKQKE NTSRKKIQEK SKLPMRKRKV PCSKDVDQKK PYLRECKLSL 360 DESLEQSNML TVLIDDEELE LTELQAGPNP LRCSAHLASS GRHGCPLCKD LLARFPPESV 420 KMKQPFCTRP WDSSPELVKK LFKVLRFLYT HSVTIEVCPF TLDEFAQAFH DKDSLLLGKI 480 HVALLRLLLL DVEGEMTAGL IRRASKDCRF LGFLNFVREQ EFDVNLWSRS LNPLTWTEIL 540 RQVLVAAGYG SKQNALKREI FNKERNRMAK YGLRPRTLKG ELFALLSKQG TGGLKVSELA 600 RASQIVDLDL PNTTEELEQL IGLTLSSDIT LFEKIGPSAY RLRVDPHVKG KLDLLSETED 660 SGSVDDDSVD ASSSSDDSDD SEEMNSAIQE RQIVKYKAGR RKTGQKIAKC TEIDESYSGE 720 AWVLGLMEGE YSDLSIEEKL NALAALVDLV GAGSILRTKE PMRAISFIPN TRSHGSGAKI 780 KKSSSDHYLP PQASGEGLAH NVEETYSLPV SCPTDFSATF LKTSKKGQSF VNTNGYRPGG 840 PRTKNPEPMG EPGQVVHPLQ SIYLGSDRRY NSYWLFLGPC TADDPGHRRV YFESSEDGHW 900 EVIDTSQALR MLLSVLDGRG TREARLFASL EKRETCLCQA MDEYITDEIR IRQTRRSDPS 960 DLDRNSGDGS SPISDVDNIM IPAESTDNLL SASGAIILEV GRSGQDKKQK WERLQAFDKW 1020 IWSSFYSSLN AVKYRKRSYM ESLARCESCH DLYWRDEKHC KICHTTFEID FDLEERYAIH 1080 VATCREIEDT SEFPKHKVLP SQLQALKAAI HAIEAIMPEA ALANTWTSSA HKVWVKRLRR 1140 TSSLAELLQV LVDFVGAINE EWLYECASAL GSNMDLDDII VYFQTMPQTT SAVALWMVKL 1200 DSLIGPYLES VQSERRLTSM SQLKQARPVR DGLESIKIIF SMRPSQDHQD TS

Sequence ? help Back to Top

Protein Sequence Length: 1252 aa Download sequence Send to blast

MMISMQIKTT KKKTQTQLQS LEKFYSEEKY PKQKALEEYA TSLNLTYSQI RTWFVERRRK  60
EKRENEALSN SKSSESVQPE SDQSNDSALF AVDRHVGRKD KHSAPMMRRK DISGQGEIKG  120
HTLLICDELQ NPESTCLKKR FSAGYSNQLV RHKDRHNISG QQMKNSLGGR VYRAEKKHLV  180
RLQVLFSKDH ILKKVFRKDG PPLGVEFDPL PANVFGQRTG SQNLQSCRES QKSLKRRKVS  240
ESPMADPVTS HERNVPERKY GIGKGLMTVW HATNSGSGKI PTGIDFVDGS ESWMLFTSNA  300
SLKETSCQVS KGMRQRKQKE NTSRKKIQEK SKLPMRKRKV PCSKDVDQKK PYLRECKLSL  360
DESLEQSNML TVLIDDEELE LTELQAGPNP LRCSAHLASS GRHGCPLCKD LLARFPPESV  420
KMKQPFCTRP WDSSPELVKK LFKVLRFLYT HSVTIEVCPF TLDEFAQAFH DKDSLLLGKI  480
HVALLRLLLL DVEGEMTAGL IRRASKDCRF LGFLNFVREQ EFDVNLWSRS LNPLTWTEIL  540
RQVLVAAGYG SKQNALKREI FNKERNRMAK YGLRPRTLKG ELFALLSKQG TGGLKVSELA  600
RASQIVDLDL PNTTEELEQL IGLTLSSDIT LFEKIGPSAY RLRVDPHVKG KLDLLSETED  660
SGSVDDDSVD ASSSSDDSDD SEEMNSAIQE RQIVKYKAGR RKTGQKIAKC TEIDESYSGE  720
AWVLGLMEGE YSDLSIEEKL NALAALVDLV GAGSILRTKE PMRAISFIPN TRSHGSGAKI  780
KKSSSDHYLP PQASGEGLAH NVEETYSLPV SCPTDFSATF LKTSKKGQSF VNTNGYRPGG  840
PRTKNPEPMG EPGQVVHPLQ SIYLGSDRRY NSYWLFLGPC TADDPGHRRV YFESSEDGHW  900
EVIDTSQALR MLLSVLDGRG TREARLFASL EKRETCLCQA MDEYITDEIR IRQTRRSDPS  960
DLDRNSGDGS SPISDVDNIM IPAESTDNLL SASGAIILEV GRSGQDKKQK WERLQAFDKW  1020
IWSSFYSSLN AVKYRKRSYM ESLARCESCH DLYWRDEKHC KICHTTFEID FDLEERYAIH  1080
VATCREIEDT SEFPKHKVLP SQLQALKAAI HAIEAIMPEA ALANTWTSSA HKVWVKRLRR  1140
TSSLAELLQV LVDFVGAINE EWLYECASAL GSNMDLDDII VYFQTMPQTT SAVALWMVKL  1200
DSLIGPYLES VQSERRLTSM SQLKQARPVR DGLESIKIIF SMRPSQDHQD TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	61	RRRKEK
2	56	63	RRRKEKRE
3	231	237	KSLKRRK
4	323	338	RKKIQEKSKLPMRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019708011.1	0.0	LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT3-like
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A2H3YAK3	0.0	A0A2H3YAK3_PHODC; homeobox-DDT domain protein RLT3-like
STRING	XP_008795938.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator