PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927295.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 1066aa    MW: 117486 Da    PI: 7.7616
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927295.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.6e-41153230178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C+adls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  XP_010927295.1 153 MCQVDDCRADLSNAKDYHRRHKVCEVHSKSAKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 230
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33148215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37152231IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29154227IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.8E-7246257IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-7496497IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.22E-8812950IPR020683Ankyrin repeat-containing domain
CDDcd002045.45E-7853955No hitNo description
Gene3DG3DSA:1.25.40.202.8E-7856950IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.853896963IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.523896917IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MEGQVGAQVG TPLFFHQQLP VQFHEATSSG KKRDFPWQGH HQQQRLMGAS LPNNNPSGNW  60
NPKMWAWDSF NFVAKPSVDA SDVLRAVGTD VEQRKKGEES SKGLILGKGL GEDEENLTLK  120
LGGGNYSAAE EPVARPNKRV QSGSPGSRGS YPMCQVDDCR ADLSNAKDYH RRHKVCEVHS  180
KSAKALVGKQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVPSQLLLS  240
RNQENAANGN LDIVNLLALL ARFQVPCNNA GKLASQPPLP DRDRLIQVLS KISNLNTANS  300
SSRLPVSGGF DLNVSQATQQ GSFEQSPKGS ENPAAPSTRN LLAVVSAALT ASAPEAIASL  360
SQGSSDSSGN DKAKLQCAEP ATDVNSRSKP IQTFPSAGVV RTNCISRSPI EVPEQPVHEA  420
WPSLPLQLFG PAEGDSAPKM GSVIKYLSSE RSNPMEESMK HARMSNCRED NATVELSTGR  480
GWNATLELFK DPQRRLENGA VQKHPYQAGY TSSSGSDHSP SSSNSDTQDR TGRIIFKLFG  540
KDPSNFPGTL RAQILNWLSL SPSEMESYIR PGCVVLSVYL SMPSIAWDQL EGDLLQQVTS  600
LVQCSESEFW RNGRFLVRTS RQLVSHKDGK IRLCKSWRTG SAPELTSVSP VAVVSGQETS  660
LVLKGHNLTV PGTKIHCTYM GKYTSKDVLC SAYPGNMCDD SSVESFDFPG GSPTVFGRCF  720
IEVENGFKGN SFPVIIADAR ICQELRVLES EFDEDVRIAD FIPEHQVQEN GQPRSREDAL  780
HFLNELGWLF QKTNTFCTSS SPDFSTKRFK YLLTFSVERD WCALVKTLLD VLAERNSRSD  840
ALSQETLEML LEIHLLNRAV KRKCRKMVDL LIHYSVRHGN DNTNIYLFPP NLAGPSGVTP  900
LHLAASTEDS EDMVDALTSD PEEIGLNCWD SLRDDNGQSP FMYATLKNNH SYNSLVARKL  960
ADRKNGQVSI SVGHEEVSFD KSWITGEADR PVSHPSQARP CALCSVAGAG RLRQAPHTRG  1020
LLERPYIHSM LAIAAVCVCV CLFLRGLPQI GSVAPFKWEN VDFGPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-31143227184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927295.10.0squamosa promoter-binding-like protein 15 isoform X1
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2H3ZU480.0A0A2H3ZU48_PHODC; squamosa promoter-binding-like protein 15
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14