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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927153.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 311aa MW: 34397.9 Da PI: 6.664 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 134 | 153 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ XP_010927153.1 134 FSCTVCNKTFNRFNNMQMHM 153 89*****************9 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00083 | 222 | 244 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F + + ++H +++ XP_010927153.1 222 FGCRRCGKAFAVRGDWRTHEKNC 244 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-5 | 129 | 155 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 134 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 134 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 134 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 185 | 217 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.86E-6 | 208 | 242 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 208 | 242 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 160 | 222 | 242 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MHSPPSYASH GFFTKGGGGS SMSSPQQEEE DHSILLLTLW PPGQQNNPSS CSPSASSSSS 60 NSWFQHPPSN KQHLSQALNQ PDDEDSNVTI ALSIGPPSAS TGTNASNMIT TSNSTPTQYW 120 IPSAAEILVS TTQFSCTVCN KTFNRFNNMQ MHMWGHGSQY RKGSESLRGA TRTMASSSLM 180 RLPCYCCAEG CKNNIEHPRS RPLKDFRTLQ THYKRKHGAR PFGCRRCGKA FAVRGDWRTH 240 EKNCGKLWFC ICGSDFKHKR SLKDHVRSFG GGHAPHIVES MSVDEEEEEE EEEEGEDVDE 300 EGNGENGDML S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927153.1 | 0.0 | zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-111 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A2H3XZT0 | 1e-161 | A0A2H3XZT0_PHODC; zinc finger protein WIP6-like | ||||
STRING | XP_008791254.1 | 1e-162 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11306 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-107 | C2H2-like zinc finger protein |