PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927153.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 311aa    MW: 34397.9 Da    PI: 6.664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927153.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05134153120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_010927153.1 134 FSCTVCNKTFNRFNNMQMHM 153
                     89*****************9 PP

2zf-C2H211.60.00083222244123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  + + ++H +++
  XP_010927153.1 222 FGCRRCGKAFAVRGDWRTHEKNC 244
                     56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5129155No hitNo description
PROSITE profilePS5015710.201134161IPR007087Zinc finger, C2H2
SMARTSM003550.15134156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5134153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SMARTSM00355220185217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.86E-6208242No hitNo description
Gene3DG3DSA:3.30.160.603.2E-5208242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355160222242IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MHSPPSYASH GFFTKGGGGS SMSSPQQEEE DHSILLLTLW PPGQQNNPSS CSPSASSSSS  60
NSWFQHPPSN KQHLSQALNQ PDDEDSNVTI ALSIGPPSAS TGTNASNMIT TSNSTPTQYW  120
IPSAAEILVS TTQFSCTVCN KTFNRFNNMQ MHMWGHGSQY RKGSESLRGA TRTMASSSLM  180
RLPCYCCAEG CKNNIEHPRS RPLKDFRTLQ THYKRKHGAR PFGCRRCGKA FAVRGDWRTH  240
EKNCGKLWFC ICGSDFKHKR SLKDHVRSFG GGHAPHIVES MSVDEEEEEE EEEEGEDVDE  300
EGNGENGDML S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927153.10.0zinc finger protein WIP6
SwissprotQ9FX681e-111ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2H3XZT01e-161A0A2H3XZT0_PHODC; zinc finger protein WIP6-like
STRINGXP_008791254.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-107C2H2-like zinc finger protein