PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927009.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 476aa    MW: 53027.8 Da    PI: 9.4835
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927009.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-1674133155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_010927009.1  74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 133
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-1774143IPR016177DNA-binding domain
PfamPF008471.7E-1274133IPR001471AP2/ERF domain
SMARTSM003802.5E-2575147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1575142IPR001471AP2/ERF domain
PROSITE profilePS5103220.09975141IPR001471AP2/ERF domain
PRINTSPR003673.7E-57687IPR001471AP2/ERF domain
PRINTSPR003673.7E-5123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MATASSSSAD HGLPKAEAAT GEGGGGEGSS EGRRAAASDQ MSFRGIKKAR KERVCTAKER  60
ISRMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA  120
ARAYDLAALK YWGAGTVINF PVSDYARDLE EMQMVSKEEY LVSLRRKSSA FSRGFPKYRG  180
LSRQPQSTRW DASLGQMIGN EYCNNLNCST SRDVATDGKY AGSFGMERKV DLTSYIRWWA  240
PKKTRQSEST SNAEGVAREL RTLECSVRPT EPYQLPSLGL PHNGKPHARG VSACSILSKS  300
EAFKNFLEKR SKTSETKDDT SYKDMEHKKA APLFFSGGGL DRSGVTLGLS ELAVQRTPYS  360
FAPLVSAPLR TSWNSVDPVP DPVFWTSLVP PSGQSLTTMF RKNDISSSYS YQCLDWSIKE  420
LLHGLVLLFK VWHEQSDVTC CGDTPPLRCR LAEMHLWCIN GSMYNFKNGI HILYAT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927009.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-123AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2H3YR900.0A0A2H3YR90_PHODC; AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
STRINGXP_008809562.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-119AP2 family protein