PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926916.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 342aa    MW: 38018.3 Da    PI: 7.6939
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926916.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.9e-33203260259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+H+h+
  XP_010926916.1 203 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYQDPTVVITTYEGQHTHQ 260
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-34187262IPR003657WRKY domain
SuperFamilySSF1182903.4E-29194262IPR003657WRKY domain
PROSITE profilePS5081131.514197262IPR003657WRKY domain
SMARTSM007745.1E-38202261IPR003657WRKY domain
PfamPF031061.3E-25203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSGENRELYH HGHHFLRDRG DLQFHDDLSS FIPQRPSGAT LHDLQGLDLQ TASQFMSFND  60
CLHGSSDYGL LAKAFDMLYS SPELFCPRDV GPVKQELVVD TNIGANLNVS TGGGGGGGGG  120
GTTPATPNSS VSLSSTEAAG EEDSGRCKKD QQKVEEEEKQ QTKEGEDGGD KSKKVNKPRK  180
KGEKRQRAPR FAFMTRSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT QKCSVKKRVE  240
RSYQDPTVVI TTYEGQHTHQ SPATIRGSTH MLAPPPTVPT SFRQDLLVHQ MPQLNAGSQQ  300
VQGDANPNMY LPTLPAHLQQ LQFPDYGLLQ DMVPSFIHNK QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27192263778Probable WRKY transcription factor 4
2lex_A2e-27192263778Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110121TGGGGGGGGGGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926916.10.0WRKY transcription factor 28
TrEMBLA0A2H3X2760.0A0A2H3X276_PHODC; WRKY transcription factor 28-like
STRINGXP_008777186.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-53WRKY DNA-binding protein 28