PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926832.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

CAMTA

Protein Properties

Length: 943aa MW: 105619 Da PI: 6.3505

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926832.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	156.7	4.9e-49	16	130	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++rwlk+ e++ iL+n+e+++l+++++++p+sgsl+L+nr+++r++r+DGy w+kk +g+t E he+LKvg+ evl+cyYa++e+np fqrr XP_010926832.1 16 DaQTRWLKPVEVLFILHNHESFQLSNKPPDKPPSGSLLLFNRRVLRNYRNDGYLWRKKNNGRTLAESHEHLKVGAAEVLSCYYARGEQNPCFQRR 110 4499***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylev 117 +yw+L+ + e+iv+vhy++v XP_010926832.1 111 IYWMLDPANEHIVFVHYRDV 130 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.382	10	136	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.7E-66	13	131	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.6E-44	17	130	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.02E-15	378	462	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	5.1E-5	379	470	IPR013783	Immunoglobulin-like fold
CDD	cd00102	1.83E-4	379	462	No hit	No description
Pfam	PF01833	5.3E-4	381	454	IPR002909	IPT domain
SuperFamily	SSF48403	1.71E-13	530	673	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-14	562	674	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.22E-7	567	671	No hit	No description
PROSITE profile	PS50297	14.53	579	671	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0011	612	641	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.499	612	644	IPR002110	Ankyrin repeat
SMART	SM00015	79	732	754	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.852	733	762	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.7E-5	777	829	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.22	782	804	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.632	784	812	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	784	803	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.11	805	827	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.919	806	831	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.4E-4	807	826	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MQEGYQSFDI NKLCKDAQTR WLKPVEVLFI LHNHESFQLS NKPPDKPPSG SLLLFNRRVL 60 RNYRNDGYLW RKKNNGRTLA ESHEHLKVGA AEVLSCYYAR GEQNPCFQRR IYWMLDPANE 120 HIVFVHYRDV AEGRFVPEPI FSVSTESPST FNQTNSITDA QVQGFPTQIN ELNEQCQNPC 180 SSVSVEEASS EFVTGKTEKP LLIKMDTSET YNQPLLPEVN HALRKLEEQL SLDDDDDGNG 240 YIYSEEKLHP SCNQNEKSED LGILNHETRD FVQETLDSLL DQLKHEANDH VEEGGQQDGS 300 HALQMVKSPE FSRWSHGSHS LINSTSTINS CGALSGLLTP GNDNNTHGLE TVLLTGNSVC 360 SSSGADFGLP VAQKPWFNIC EISPEWAFSF ERTKVIITGH FLCNPPGHSW AILFGDAEVP 420 LEIVQEGVFR CLAPKHDPGK VKLRITSGNG EPCSDVREFE FRANPGTSSF SSTSKQGYAV 480 MGTEELLLLV RFVQLLLYGH DRTSIPQEGD VETCIDRSRK LKRNDDRLGE IVEALLAGRE 540 TSANTMDWIL QELLKDKLQQ WLLSKHLENA DQTCVLSKQE QCIIHMISGL GYEWALNPIL 600 TSGTGINFRD TKGWTALHWA ACFGREKMVA ALLAAGASAG AVTDPTPQEP AGKTPGSLAA 660 ANDHKGLAGY LSEAALTNHL FSLAMGKSEI SKTSGPVEAD GGVESISQRS AHLQGGTEDQ 720 LLLKDSLAAV RNATQAAARI QSTFRAYSFW KKHQNADQDK DGFSPEDING VFVAFRGLCD 780 RAFHKAALSI QKNYRCWKRR KEFVTLRKHV IKIQARVRAH QARKKYELLL TVGILEKIIL 840 RWCRRRVGLR GFRADPESIN KEEENDILKV FRKQKVDAAL DEAVSSVLSM VDCPEAQQQY 900 RRMLESYRQA KADLSKVETA TSRVSGDWVS RELEDYLNQL GHE

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MQEGYQSFDI NKLCKDAQTR WLKPVEVLFI LHNHESFQLS NKPPDKPPSG SLLLFNRRVL  60
RNYRNDGYLW RKKNNGRTLA ESHEHLKVGA AEVLSCYYAR GEQNPCFQRR IYWMLDPANE  120
HIVFVHYRDV AEGRFVPEPI FSVSTESPST FNQTNSITDA QVQGFPTQIN ELNEQCQNPC  180
SSVSVEEASS EFVTGKTEKP LLIKMDTSET YNQPLLPEVN HALRKLEEQL SLDDDDDGNG  240
YIYSEEKLHP SCNQNEKSED LGILNHETRD FVQETLDSLL DQLKHEANDH VEEGGQQDGS  300
HALQMVKSPE FSRWSHGSHS LINSTSTINS CGALSGLLTP GNDNNTHGLE TVLLTGNSVC  360
SSSGADFGLP VAQKPWFNIC EISPEWAFSF ERTKVIITGH FLCNPPGHSW AILFGDAEVP  420
LEIVQEGVFR CLAPKHDPGK VKLRITSGNG EPCSDVREFE FRANPGTSSF SSTSKQGYAV  480
MGTEELLLLV RFVQLLLYGH DRTSIPQEGD VETCIDRSRK LKRNDDRLGE IVEALLAGRE  540
TSANTMDWIL QELLKDKLQQ WLLSKHLENA DQTCVLSKQE QCIIHMISGL GYEWALNPIL  600
TSGTGINFRD TKGWTALHWA ACFGREKMVA ALLAAGASAG AVTDPTPQEP AGKTPGSLAA  660
ANDHKGLAGY LSEAALTNHL FSLAMGKSEI SKTSGPVEAD GGVESISQRS AHLQGGTEDQ  720
LLLKDSLAAV RNATQAAARI QSTFRAYSFW KKHQNADQDK DGFSPEDING VFVAFRGLCD  780
RAFHKAALSI QKNYRCWKRR KEFVTLRKHV IKIQARVRAH QARKKYELLL TVGILEKIIL  840
RWCRRRVGLR GFRADPESIN KEEENDILKV FRKQKVDAAL DEAVSSVLSM VDCPEAQQQY  900
RRMLESYRQA KADLSKVETA TSRVSGDWVS RELEDYLNQL GHE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926832.1	0.0	calmodulin-binding transcription activator 4 isoform X1
Swissprot	Q9FYG2	1e-168	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2H3ZYH7	0.0	A0A2H3ZYH7_PHODC; calmodulin-binding transcription activator 4-like isoform X4
STRING	XP_008806417.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9407	34	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-153	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]